Hb_042463_030

Information

Type -
Description -
Location Contig42463: 19054-21382
Sequence    

Annotation

kegg
ID brp:103845224
description putative ribonuclease H protein At1g65750
nr
ID AFK48593.1
description unknown [Lotus japonicus]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID I3T7V1
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41987: 20735-21167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_030 0.0 - - unknown [Lotus japonicus]
2 Hb_012163_050 0.0967088484 - - ATPase subunit [Medicago truncatula]
3 Hb_000879_260 0.1008093119 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
4 Hb_006040_030 0.1212513721 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
5 Hb_171685_060 0.1251607159 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
6 Hb_041813_030 0.134295215 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
7 Hb_156746_010 0.1364402043 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
8 Hb_042463_070 0.1371715322 - - 60S ribosomal protein L16, putative [Ricinus communis]
9 Hb_013420_020 0.1380312465 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000373_140 0.1456368582 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_077242_020 0.1460624454 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
12 Hb_079902_010 0.1512314958 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
13 Hb_013420_090 0.1574654405 - - BnaCnng13090D [Brassica napus]
14 Hb_101462_010 0.1579640274 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
15 Hb_008085_020 0.1579647577 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
16 Hb_034168_070 0.1580772059 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
17 Hb_004208_040 0.1584534438 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
18 Hb_006040_020 0.1584691013 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
19 Hb_000920_020 0.1585301652 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
20 Hb_013420_050 0.1597899939 - - hypothetical protein (mitochondrion) [Vicia faba]

Gene co-expression network

sample Hb_042463_030 Hb_042463_030 Hb_012163_050 Hb_012163_050 Hb_042463_030--Hb_012163_050 Hb_000879_260 Hb_000879_260 Hb_042463_030--Hb_000879_260 Hb_006040_030 Hb_006040_030 Hb_042463_030--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_042463_030--Hb_171685_060 Hb_041813_030 Hb_041813_030 Hb_042463_030--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_030--Hb_156746_010 Hb_012163_050--Hb_171685_060 Hb_013420_020 Hb_013420_020 Hb_012163_050--Hb_013420_020 Hb_012163_050--Hb_156746_010 Hb_012163_050--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_012163_050--Hb_042463_070 Hb_000373_140 Hb_000373_140 Hb_000879_260--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000879_260--Hb_101462_010 Hb_077242_020 Hb_077242_020 Hb_000879_260--Hb_077242_020 Hb_079902_010 Hb_079902_010 Hb_000879_260--Hb_079902_010 Hb_001508_010 Hb_001508_010 Hb_000879_260--Hb_001508_010 Hb_006040_030--Hb_156746_010 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_006040_030--Hb_077242_020 Hb_171685_060--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_171685_060--Hb_004643_010 Hb_171685_060--Hb_006040_030 Hb_171685_060--Hb_013420_020 Hb_171685_060--Hb_041813_030 Hb_041813_030--Hb_042463_070 Hb_041813_030--Hb_156746_010 Hb_041813_030--Hb_077242_020 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_013420_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0919581 0.0274797 0.0140594 0.0184466 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0330666 0.0614177 0.0265071 2.52776

CAGE analysis