Hb_006040_020

Information

Type -
Description -
Location Contig6040: 7224-7709
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp30
description atp8; ATPase subunit 8
nr
ID BAO50911.1
description ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P41248
description Putative ATP synthase protein YMF19 OS=Helianthus annuus GN=YMF19 PE=3 SV=1
trembl
ID W6JNC3
description ATPase subunit 8 OS=Hevea brasiliensis GN=atp8 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atpase subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_020 0.0 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
2 Hb_006040_010 0.0586494253 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_030 0.0790333267 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
4 Hb_171685_080 0.0865545398 - - unknown [Allium cepa]
5 Hb_004987_040 0.0923621024 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_013420_050 0.0925864237 - - hypothetical protein (mitochondrion) [Vicia faba]
7 Hb_008085_020 0.0965671834 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
8 Hb_131816_010 0.0992796679 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_007645_020 0.1013150419 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
10 Hb_003688_030 0.1030425715 - - NADH dehydrogenase 2-like ORF 180
11 Hb_005054_140 0.1070706949 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_156746_010 0.1080379208 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
13 Hb_010053_060 0.1084167087 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000959_380 0.1097612462 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
15 Hb_000326_100 0.112554993 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
16 Hb_004208_040 0.1134826938 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
17 Hb_101462_010 0.1155259529 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
18 Hb_001790_110 0.1164058476 - - unknown [Populus trichocarpa]
19 Hb_004987_050 0.1173360252 - - -
20 Hb_077242_020 0.1197336683 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]

Gene co-expression network

sample Hb_006040_020 Hb_006040_020 Hb_006040_010 Hb_006040_010 Hb_006040_020--Hb_006040_010 Hb_006040_030 Hb_006040_030 Hb_006040_020--Hb_006040_030 Hb_171685_080 Hb_171685_080 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_013420_050 Hb_013420_050 Hb_006040_020--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_006040_020--Hb_008085_020 Hb_006040_010--Hb_008085_020 Hb_006040_010--Hb_006040_030 Hb_006040_010--Hb_171685_080 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_156746_010 Hb_156746_010 Hb_006040_030--Hb_156746_010 Hb_041813_030 Hb_041813_030 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050 Hb_171685_080--Hb_003688_030 Hb_171685_080--Hb_013420_050 Hb_171685_080--Hb_008085_020 Hb_171685_080--Hb_006040_030 Hb_004208_040 Hb_004208_040 Hb_004987_040--Hb_004208_040 Hb_004375_020 Hb_004375_020 Hb_004987_040--Hb_004375_020 Hb_010053_060 Hb_010053_060 Hb_004987_040--Hb_010053_060 Hb_000373_140 Hb_000373_140 Hb_004987_040--Hb_000373_140 Hb_131816_010 Hb_131816_010 Hb_004987_040--Hb_131816_010 Hb_013420_050--Hb_156746_010 Hb_013420_050--Hb_006040_010 Hb_042463_070 Hb_042463_070 Hb_013420_050--Hb_042463_070 Hb_013420_050--Hb_006040_030 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_008085_020--Hb_007645_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12 1.25113 0.422782 0.604799 0 0.700809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.372205 1.61242 122.542

CAGE analysis