Hb_003688_030

Information

Type -
Description -
Location Contig3688: 17702-19227
Sequence    

Annotation

kegg
ID mtr:MTR_1g088510
description NAD(P)H-quinone oxidoreductase subunit 2 A
nr
ID -
description NADH dehydrogenase 2-like ORF 180
swissprot
ID P0CC48
description NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1
trembl
ID A0A023ZQY2
description NADH-plastoquinone oxidoreductase subunit 2 OS=Beta vulgaris subsp. vulgaris GN=ndhB PE=4 SV=1
Gene Ontology
ID GO:0005886
description nadh-plastoquinone oxidoreductase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_030 0.0 - - NADH dehydrogenase 2-like ORF 180
2 Hb_154980_010 0.0651995288 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
3 Hb_002835_420 0.0681426012 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
4 Hb_106850_010 0.0737801622 - - photosystem II protein D2 [Lactuca sativa]
5 Hb_007645_020 0.0758398386 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
6 Hb_145745_030 0.0768016663 - - BnaC09g26890D [Brassica napus]
7 Hb_104509_010 0.0790245258 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
8 Hb_126973_010 0.0825909239 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
9 Hb_000326_100 0.0836379123 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
10 Hb_003963_030 0.0848212639 - - psbB [Jatropha curcas]
11 Hb_131816_010 0.0850439744 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_003693_040 0.0853686602 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
13 Hb_003144_020 0.0862190403 - - (R)-limonene synthase, putative [Ricinus communis]
14 Hb_006302_050 0.0863424092 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
15 Hb_007645_050 0.0875607457 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
16 Hb_171685_080 0.0938650928 - - unknown [Allium cepa]
17 Hb_005224_020 0.0948158386 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
18 Hb_000959_380 0.0955618695 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
19 Hb_010172_020 0.0962167539 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
20 Hb_005914_030 0.0967191049 - - -

Gene co-expression network

sample Hb_003688_030 Hb_003688_030 Hb_154980_010 Hb_154980_010 Hb_003688_030--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_003688_030--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_003688_030--Hb_106850_010 Hb_007645_020 Hb_007645_020 Hb_003688_030--Hb_007645_020 Hb_145745_030 Hb_145745_030 Hb_003688_030--Hb_145745_030 Hb_104509_010 Hb_104509_010 Hb_003688_030--Hb_104509_010 Hb_154980_010--Hb_002835_420 Hb_154980_010--Hb_106850_010 Hb_154980_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_154980_010--Hb_006302_050 Hb_126973_010 Hb_126973_010 Hb_154980_010--Hb_126973_010 Hb_031194_030 Hb_031194_030 Hb_154980_010--Hb_031194_030 Hb_002835_420--Hb_106850_010 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_002835_420--Hb_126973_010 Hb_002835_420--Hb_006302_050 Hb_106850_010--Hb_104509_010 Hb_106850_010--Hb_006302_050 Hb_106850_010--Hb_126973_010 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_007645_020--Hb_104509_010 Hb_007645_020--Hb_106850_010 Hb_007645_020--Hb_154980_010 Hb_000959_380 Hb_000959_380 Hb_007645_020--Hb_000959_380 Hb_145745_030--Hb_003693_040 Hb_145745_030--Hb_126973_010 Hb_007645_050 Hb_007645_050 Hb_145745_030--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_145745_030--Hb_003963_030 Hb_145745_030--Hb_002835_420 Hb_104509_010--Hb_006302_050 Hb_104509_010--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164678 0.0853957 0.526879 0.157 0 0.162138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0976442 0.0218878 32.6121

CAGE analysis