Hb_145745_030

Information

Type -
Description -
Location Contig145745: 38027-39336
Sequence    

Annotation

kegg
ID mtr:MTR_2g006030
description hypothetical protein
nr
ID CDX71648.1
description BnaC09g26890D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078C9H5
description BnaC09g26890D protein OS=Brassica napus GN=BnaC09g26890D PE=4 SV=1
Gene Ontology
ID GO:0044425
description BnaC09g26890D

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11841: 38983-39165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145745_030 0.0 - - BnaC09g26890D [Brassica napus]
2 Hb_003693_040 0.0706330626 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
3 Hb_003688_030 0.0768016663 - - NADH dehydrogenase 2-like ORF 180
4 Hb_126973_010 0.080529738 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
5 Hb_007645_050 0.0811453585 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
6 Hb_003963_030 0.083305445 - - psbB [Jatropha curcas]
7 Hb_002835_420 0.0910199602 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
8 Hb_154980_010 0.0913605838 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_007645_020 0.0921510009 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
10 Hb_007645_060 0.0974478151 - - cytochrome f [Hevea brasiliensis]
11 Hb_106850_010 0.0977883332 - - photosystem II protein D2 [Lactuca sativa]
12 Hb_088080_010 0.0999929815 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
13 Hb_031194_030 0.1016650649 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
14 Hb_000938_050 0.1031868339 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
15 Hb_007595_030 0.1048321149 - - psbA gene product (chloroplast) [Silene noctiflora]
16 Hb_000627_200 0.1054180595 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
17 Hb_006302_050 0.1074258406 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
18 Hb_104509_010 0.107598405 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
19 Hb_003407_050 0.1085661445 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_005018_050 0.1089794699 - - PREDICTED: licodione synthase-like [Jatropha curcas]

Gene co-expression network

sample Hb_145745_030 Hb_145745_030 Hb_003693_040 Hb_003693_040 Hb_145745_030--Hb_003693_040 Hb_003688_030 Hb_003688_030 Hb_145745_030--Hb_003688_030 Hb_126973_010 Hb_126973_010 Hb_145745_030--Hb_126973_010 Hb_007645_050 Hb_007645_050 Hb_145745_030--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_145745_030--Hb_003963_030 Hb_002835_420 Hb_002835_420 Hb_145745_030--Hb_002835_420 Hb_007645_020 Hb_007645_020 Hb_003693_040--Hb_007645_020 Hb_003693_040--Hb_003688_030 Hb_003693_040--Hb_126973_010 Hb_054839_010 Hb_054839_010 Hb_003693_040--Hb_054839_010 Hb_106850_010 Hb_106850_010 Hb_003693_040--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_003688_030--Hb_154980_010 Hb_003688_030--Hb_002835_420 Hb_003688_030--Hb_106850_010 Hb_003688_030--Hb_007645_020 Hb_104509_010 Hb_104509_010 Hb_003688_030--Hb_104509_010 Hb_126973_010--Hb_106850_010 Hb_126973_010--Hb_154980_010 Hb_126973_010--Hb_002835_420 Hb_005018_050 Hb_005018_050 Hb_126973_010--Hb_005018_050 Hb_006302_050 Hb_006302_050 Hb_126973_010--Hb_006302_050 Hb_126973_010--Hb_104509_010 Hb_007645_050--Hb_003963_030 Hb_088080_010 Hb_088080_010 Hb_007645_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_007645_060 Hb_007645_060 Hb_007645_050--Hb_007645_060 Hb_007645_050--Hb_154980_010 Hb_003963_030--Hb_088080_010 Hb_003963_030--Hb_007595_030 Hb_003963_030--Hb_154980_010 Hb_003963_030--Hb_031194_030 Hb_003963_030--Hb_002835_420 Hb_002835_420--Hb_154980_010 Hb_002835_420--Hb_106850_010 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_002835_420--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104027 0 0.32121 0.18856 0 0.152395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0344054 13.85

CAGE analysis