Hb_003693_040

Information

Type -
Description -
Location Contig3693: 70309-72309
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00111
description ndhA; NADH dehydrogenase subunit 1
nr
ID YP_004327716.1
description NADH dehydrogenase subunit 1 [Hevea brasiliensis]
swissprot
ID Q49KU3
description NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1
trembl
ID F2X0H0
description NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hevea brasiliensis GN=ndhA PE=3 SV=1
Gene Ontology
ID GO:0009507
description nadh dehydrogenase subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003693_040 0.0 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
2 Hb_145745_030 0.0706330626 - - BnaC09g26890D [Brassica napus]
3 Hb_007645_020 0.0771897966 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
4 Hb_003688_030 0.0853686602 - - NADH dehydrogenase 2-like ORF 180
5 Hb_126973_010 0.0969224618 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
6 Hb_054839_010 0.1007477474 - - PsbC, partial (chloroplast) [Asimina parviflora]
7 Hb_106850_010 0.1036809037 - - photosystem II protein D2 [Lactuca sativa]
8 Hb_104509_010 0.1062216267 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
9 Hb_154980_010 0.1065627095 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
10 Hb_003963_030 0.1079028815 - - psbB [Jatropha curcas]
11 Hb_006302_050 0.107908923 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
12 Hb_002835_420 0.1105722365 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
13 Hb_007645_050 0.1111555115 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
14 Hb_006040_010 0.1120227723 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
15 Hb_000627_200 0.1120808337 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
16 Hb_005914_030 0.1124911597 - - -
17 Hb_000388_020 0.1146030453 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
18 Hb_005224_020 0.1175737127 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
19 Hb_003144_020 0.118204104 - - (R)-limonene synthase, putative [Ricinus communis]
20 Hb_000959_380 0.1192308028 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]

Gene co-expression network

sample Hb_003693_040 Hb_003693_040 Hb_145745_030 Hb_145745_030 Hb_003693_040--Hb_145745_030 Hb_007645_020 Hb_007645_020 Hb_003693_040--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_003693_040--Hb_003688_030 Hb_126973_010 Hb_126973_010 Hb_003693_040--Hb_126973_010 Hb_054839_010 Hb_054839_010 Hb_003693_040--Hb_054839_010 Hb_106850_010 Hb_106850_010 Hb_003693_040--Hb_106850_010 Hb_145745_030--Hb_003688_030 Hb_145745_030--Hb_126973_010 Hb_007645_050 Hb_007645_050 Hb_145745_030--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_145745_030--Hb_003963_030 Hb_002835_420 Hb_002835_420 Hb_145745_030--Hb_002835_420 Hb_007645_020--Hb_003688_030 Hb_104509_010 Hb_104509_010 Hb_007645_020--Hb_104509_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_000959_380 Hb_000959_380 Hb_007645_020--Hb_000959_380 Hb_003688_030--Hb_154980_010 Hb_003688_030--Hb_002835_420 Hb_003688_030--Hb_106850_010 Hb_003688_030--Hb_104509_010 Hb_126973_010--Hb_106850_010 Hb_126973_010--Hb_154980_010 Hb_126973_010--Hb_002835_420 Hb_005018_050 Hb_005018_050 Hb_126973_010--Hb_005018_050 Hb_006302_050 Hb_006302_050 Hb_126973_010--Hb_006302_050 Hb_126973_010--Hb_104509_010 Hb_000388_020 Hb_000388_020 Hb_054839_010--Hb_000388_020 Hb_125153_010 Hb_125153_010 Hb_054839_010--Hb_125153_010 Hb_005087_020 Hb_005087_020 Hb_054839_010--Hb_005087_020 Hb_151061_040 Hb_151061_040 Hb_054839_010--Hb_151061_040 Hb_054839_010--Hb_006302_050 Hb_054839_010--Hb_104509_010 Hb_106850_010--Hb_154980_010 Hb_106850_010--Hb_002835_420 Hb_106850_010--Hb_104509_010 Hb_106850_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235931 0 0.369316 0.376496 0.106641 0.57799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 39.2511

CAGE analysis