Hb_007645_020

Information

Type -
Description -
Location Contig7645: 6555-7565
Sequence    

Annotation

kegg
ID mtr:MTR_4g050810
description NAD(P)H-quinone oxidoreductase subunit
nr
ID XP_003606010.1
description NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
swissprot
ID Q09FZ1
description NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis GN=ndhA PE=3 SV=1
trembl
ID G7JFY2
description NAD(P)H-quinone oxidoreductase subunit 1 OS=Medicago truncatula GN=MTR_4g050810 PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh dehydrogenase subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_020 0.0 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
2 Hb_003688_030 0.0758398386 - - NADH dehydrogenase 2-like ORF 180
3 Hb_003693_040 0.0771897966 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
4 Hb_104509_010 0.0776180321 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
5 Hb_106850_010 0.0777630452 - - photosystem II protein D2 [Lactuca sativa]
6 Hb_154980_010 0.0799699355 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
7 Hb_000959_380 0.0810488449 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
8 Hb_126973_010 0.0813354591 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
9 Hb_006302_050 0.0814855453 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
10 Hb_000326_100 0.081960013 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_054839_010 0.0857893671 - - PsbC, partial (chloroplast) [Asimina parviflora]
12 Hb_131816_010 0.0859047178 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_002835_420 0.0881466406 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
14 Hb_003144_020 0.0890721733 - - (R)-limonene synthase, putative [Ricinus communis]
15 Hb_006040_010 0.0893849276 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
16 Hb_005914_030 0.0905394654 - - -
17 Hb_145745_030 0.0921510009 - - BnaC09g26890D [Brassica napus]
18 Hb_005224_020 0.0932859064 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
19 Hb_000388_020 0.0951174017 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
20 Hb_003963_030 0.0977210763 - - psbB [Jatropha curcas]

Gene co-expression network

sample Hb_007645_020 Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_007645_020--Hb_003688_030 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_104509_010 Hb_104509_010 Hb_007645_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_000959_380 Hb_000959_380 Hb_007645_020--Hb_000959_380 Hb_003688_030--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_003688_030--Hb_002835_420 Hb_003688_030--Hb_106850_010 Hb_145745_030 Hb_145745_030 Hb_003688_030--Hb_145745_030 Hb_003688_030--Hb_104509_010 Hb_003693_040--Hb_145745_030 Hb_003693_040--Hb_003688_030 Hb_126973_010 Hb_126973_010 Hb_003693_040--Hb_126973_010 Hb_054839_010 Hb_054839_010 Hb_003693_040--Hb_054839_010 Hb_003693_040--Hb_106850_010 Hb_006302_050 Hb_006302_050 Hb_104509_010--Hb_006302_050 Hb_104509_010--Hb_106850_010 Hb_003144_020 Hb_003144_020 Hb_104509_010--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_106850_010--Hb_154980_010 Hb_106850_010--Hb_002835_420 Hb_106850_010--Hb_006302_050 Hb_106850_010--Hb_126973_010 Hb_106850_010--Hb_003144_020 Hb_154980_010--Hb_002835_420 Hb_154980_010--Hb_104509_010 Hb_154980_010--Hb_006302_050 Hb_154980_010--Hb_126973_010 Hb_031194_030 Hb_031194_030 Hb_154980_010--Hb_031194_030 Hb_000959_380--Hb_003144_020 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_000959_380--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0300201 0.547926 0.458044 0.0875681 0.522939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0537772 0.0971868 0.108873 59.313

CAGE analysis