Hb_171685_080

Information

Type -
Description -
Location Contig171685: 53919-54817
Sequence    

Annotation

kegg
ID mus:103974064
description ATP synthase subunit alpha, mitochondrial
nr
ID ADA85892.1
description unknown [Allium cepa]
swissprot
ID P18260
description ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1
trembl
ID D2XT93
description ATP synthase subunit alpha OS=Allium cepa PE=3 SV=1
Gene Ontology
ID GO:0033178
description atp synthase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16073: 52790-53177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_080 0.0 - - unknown [Allium cepa]
2 Hb_006040_010 0.08312612 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_020 0.0865545398 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
4 Hb_003688_030 0.0938650928 - - NADH dehydrogenase 2-like ORF 180
5 Hb_013420_050 0.0973351332 - - hypothetical protein (mitochondrion) [Vicia faba]
6 Hb_008085_020 0.0975077788 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
7 Hb_006040_030 0.1054490997 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
8 Hb_003157_020 0.1061911418 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
9 Hb_164415_010 0.1063070533 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000326_100 0.1105047566 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
11 Hb_156746_010 0.1167603496 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
12 Hb_007645_020 0.1179304749 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
13 Hb_010053_060 0.1182023939 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_131816_010 0.1186295553 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_010053_050 0.1188430874 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
16 Hb_004987_050 0.1194570653 - - -
17 Hb_004987_040 0.1199440164 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_000959_380 0.1227144721 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
19 Hb_005054_140 0.1251180334 - - PREDICTED: laccase-4-like [Jatropha curcas]
20 Hb_171685_060 0.1272520915 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_171685_080 Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_171685_080--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_171685_080--Hb_006040_020 Hb_003688_030 Hb_003688_030 Hb_171685_080--Hb_003688_030 Hb_013420_050 Hb_013420_050 Hb_171685_080--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_171685_080--Hb_008085_020 Hb_006040_030 Hb_006040_030 Hb_171685_080--Hb_006040_030 Hb_006040_010--Hb_006040_020 Hb_006040_010--Hb_008085_020 Hb_006040_010--Hb_006040_030 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_006040_010--Hb_003688_030 Hb_006040_020--Hb_006040_030 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_006040_020--Hb_013420_050 Hb_006040_020--Hb_008085_020 Hb_154980_010 Hb_154980_010 Hb_003688_030--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_003688_030--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_003688_030--Hb_106850_010 Hb_003688_030--Hb_007645_020 Hb_145745_030 Hb_145745_030 Hb_003688_030--Hb_145745_030 Hb_104509_010 Hb_104509_010 Hb_003688_030--Hb_104509_010 Hb_156746_010 Hb_156746_010 Hb_013420_050--Hb_156746_010 Hb_013420_050--Hb_006040_010 Hb_042463_070 Hb_042463_070 Hb_013420_050--Hb_042463_070 Hb_013420_050--Hb_006040_030 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_008085_020--Hb_007645_020 Hb_006040_030--Hb_156746_010 Hb_041813_030 Hb_041813_030 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0823087 0.030673 0.0826271 0 0 0.0486115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.117562 0.134631 12.5059

CAGE analysis