Hb_004987_040

Information

Type -
Description -
Location Contig4987: 53706-55356
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004987_040 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_004208_040 0.0761423935 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
3 Hb_004375_020 0.0796810789 - - hypothetical protein VITISV_034560 [Vitis vinifera]
4 Hb_006040_020 0.0923621024 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
5 Hb_010053_060 0.0927455202 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_000373_140 0.093138971 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_131816_010 0.097319695 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_101462_010 0.1020237706 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
9 Hb_010053_050 0.1044551216 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
10 Hb_010172_020 0.1102842087 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
11 Hb_004987_050 0.1123513367 - - -
12 Hb_000284_050 0.11307924 - - hypothetical protein L484_026849 [Morus notabilis]
13 Hb_000959_380 0.1162400076 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
14 Hb_003144_040 0.1167075948 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_000907_010 0.1186666194 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
16 Hb_000326_100 0.1195740027 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
17 Hb_005054_140 0.1197983076 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_171685_080 0.1199440164 - - unknown [Allium cepa]
19 Hb_018283_010 0.1206060316 - - hypothetical protein VITISV_023498 [Vitis vinifera]
20 Hb_003144_020 0.1221257238 - - (R)-limonene synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004987_040 Hb_004987_040 Hb_004208_040 Hb_004208_040 Hb_004987_040--Hb_004208_040 Hb_004375_020 Hb_004375_020 Hb_004987_040--Hb_004375_020 Hb_006040_020 Hb_006040_020 Hb_004987_040--Hb_006040_020 Hb_010053_060 Hb_010053_060 Hb_004987_040--Hb_010053_060 Hb_000373_140 Hb_000373_140 Hb_004987_040--Hb_000373_140 Hb_131816_010 Hb_131816_010 Hb_004987_040--Hb_131816_010 Hb_004208_040--Hb_000373_140 Hb_003144_040 Hb_003144_040 Hb_004208_040--Hb_003144_040 Hb_004208_040--Hb_131816_010 Hb_010172_020 Hb_010172_020 Hb_004208_040--Hb_010172_020 Hb_101462_010 Hb_101462_010 Hb_004208_040--Hb_101462_010 Hb_004375_020--Hb_000373_140 Hb_004375_020--Hb_004208_040 Hb_004375_020--Hb_101462_010 Hb_000123_070 Hb_000123_070 Hb_004375_020--Hb_000123_070 Hb_004375_020--Hb_010053_060 Hb_006040_010 Hb_006040_010 Hb_006040_020--Hb_006040_010 Hb_006040_030 Hb_006040_030 Hb_006040_020--Hb_006040_030 Hb_171685_080 Hb_171685_080 Hb_006040_020--Hb_171685_080 Hb_013420_050 Hb_013420_050 Hb_006040_020--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_006040_020--Hb_008085_020 Hb_010053_050 Hb_010053_050 Hb_010053_060--Hb_010053_050 Hb_000284_050 Hb_000284_050 Hb_010053_060--Hb_000284_050 Hb_010053_060--Hb_131816_010 Hb_000938_050 Hb_000938_050 Hb_010053_060--Hb_000938_050 Hb_004161_040 Hb_004161_040 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380 Hb_000373_140--Hb_101462_010 Hb_079902_010 Hb_079902_010 Hb_000373_140--Hb_079902_010 Hb_000373_140--Hb_000123_070 Hb_131816_010--Hb_000959_380 Hb_104509_010 Hb_104509_010 Hb_131816_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_131816_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_131816_010--Hb_003144_020 Hb_005224_020 Hb_005224_020 Hb_131816_010--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_131816_010--Hb_005914_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0228027 0.0108125 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0197055 1.2907

CAGE analysis