Hb_008085_020

Information

Type -
Description -
Location Contig8085: 39776-51739
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24080g
description hypothetical protein
nr
ID XP_011028445.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID U5GL28
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24080g PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008085_020 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
2 Hb_006040_010 0.07644862 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_020 0.0965671834 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
4 Hb_171685_080 0.0975077788 - - unknown [Allium cepa]
5 Hb_006040_030 0.1006693298 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
6 Hb_000326_100 0.104470952 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
7 Hb_007645_020 0.1091193795 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
8 Hb_003688_030 0.1167691998 - - NADH dehydrogenase 2-like ORF 180
9 Hb_000959_380 0.1198816639 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
10 Hb_164415_010 0.1270302451 - - conserved hypothetical protein [Ricinus communis]
11 Hb_131816_010 0.1296157787 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_005054_140 0.1306760552 - - PREDICTED: laccase-4-like [Jatropha curcas]
13 Hb_072695_010 0.1310257567 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
14 Hb_003144_020 0.1310991672 - - (R)-limonene synthase, putative [Ricinus communis]
15 Hb_013420_050 0.1311565311 - - hypothetical protein (mitochondrion) [Vicia faba]
16 Hb_159305_020 0.1318093729 - - 50S ribosomal protein L2-B [Medicago truncatula]
17 Hb_103255_010 0.1331909777 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_003693_040 0.1344243895 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
19 Hb_001790_110 0.1344297922 - - unknown [Populus trichocarpa]
20 Hb_004242_130 0.1362435895 - - (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_008085_020 Hb_008085_020 Hb_006040_010 Hb_006040_010 Hb_008085_020--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_008085_020--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_008085_020--Hb_171685_080 Hb_006040_030 Hb_006040_030 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_007645_020 Hb_007645_020 Hb_008085_020--Hb_007645_020 Hb_006040_010--Hb_006040_020 Hb_006040_010--Hb_006040_030 Hb_006040_010--Hb_171685_080 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_006040_020--Hb_006040_030 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_013420_050 Hb_013420_050 Hb_006040_020--Hb_013420_050 Hb_171685_080--Hb_003688_030 Hb_171685_080--Hb_013420_050 Hb_171685_080--Hb_006040_030 Hb_156746_010 Hb_156746_010 Hb_006040_030--Hb_156746_010 Hb_041813_030 Hb_041813_030 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050 Hb_003144_020 Hb_003144_020 Hb_000326_100--Hb_003144_020 Hb_000959_380 Hb_000959_380 Hb_000326_100--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_000326_100--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_000326_100--Hb_104509_010 Hb_005224_020 Hb_005224_020 Hb_000326_100--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_000326_100--Hb_005914_030 Hb_007645_020--Hb_003688_030 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_007645_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_007645_020--Hb_000959_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0423441 0.0328699 0.0275644 0.026028 0.02343 0.0484608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0411426 0.064753 0.0413247 0.0855835 9.17305

CAGE analysis