Hb_156746_010

Information

Type -
Description -
Location Contig156746: 1-381
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp35
description atp1; ATP synthase F1 subunit 1
nr
ID BAO50884.1
description ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P18260
description ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1
trembl
ID W6JLN6
description ATP synthase subunit alpha OS=Hevea brasiliensis GN=atp1 PE=3 SV=1
Gene Ontology
ID GO:0005743
description atp synthase f1 subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156746_010 0.0 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
2 Hb_006040_030 0.0629469637 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
3 Hb_042463_070 0.0814767096 - - 60S ribosomal protein L16, putative [Ricinus communis]
4 Hb_041813_030 0.0834715676 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
5 Hb_013420_050 0.0858846347 - - hypothetical protein (mitochondrion) [Vicia faba]
6 Hb_012163_050 0.0884102849 - - ATPase subunit [Medicago truncatula]
7 Hb_013420_020 0.0987297758 - - conserved hypothetical protein [Ricinus communis]
8 Hb_171685_060 0.1036812705 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
9 Hb_006040_010 0.1079409982 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
10 Hb_006040_020 0.1080379208 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
11 Hb_034168_070 0.1088479125 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
12 Hb_077242_020 0.1102717317 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
13 Hb_171685_080 0.1167603496 - - unknown [Allium cepa]
14 Hb_027357_010 0.126722838 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004643_010 0.127763838 - - cytochrome B, putative [Ricinus communis]
16 Hb_042463_020 0.133426664 - - conserved hypothetical protein [Ricinus communis]
17 Hb_042463_030 0.1364402043 - - unknown [Lotus japonicus]
18 Hb_008085_020 0.1369262876 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
19 Hb_000879_260 0.1439696701 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
20 Hb_062192_030 0.1446122117 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_156746_010 Hb_156746_010 Hb_006040_030 Hb_006040_030 Hb_156746_010--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_156746_010--Hb_042463_070 Hb_041813_030 Hb_041813_030 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_012163_050 Hb_012163_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_006040_030--Hb_012163_050 Hb_042463_070--Hb_041813_030 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_042463_070--Hb_012163_050 Hb_041813_030--Hb_077242_020 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_013420_050--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_013420_050--Hb_171685_080 Hb_013420_050--Hb_006040_010 Hb_013420_050--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_013420_020--Hb_006040_030 Hb_013420_020--Hb_171685_060 Hb_027357_010 Hb_027357_010 Hb_013420_020--Hb_027357_010 Hb_013420_020--Hb_171685_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.910747 2.31074 0.802794 0.53572 0.0870836 0.995338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.89883 1.64027 91.6215

CAGE analysis