Hb_013420_020

Information

Type -
Description -
Location Contig13420: 4689-5898
Sequence    

Annotation

kegg
ID rcu:RCOM_0439640
description hypothetical protein
nr
ID XP_002531962.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T143
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0439640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012163_050 0.0864587524 - - ATPase subunit [Medicago truncatula]
3 Hb_156746_010 0.0987297758 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_006040_030 0.1053877506 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
5 Hb_171685_060 0.1164328391 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
6 Hb_027357_010 0.1242141625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_171685_080 0.1281077301 - - unknown [Allium cepa]
8 Hb_013420_050 0.1285474354 - - hypothetical protein (mitochondrion) [Vicia faba]
9 Hb_042463_070 0.1297595033 - - 60S ribosomal protein L16, putative [Ricinus communis]
10 Hb_006040_020 0.130616212 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
11 Hb_042463_030 0.1380312465 - - unknown [Lotus japonicus]
12 Hb_013420_090 0.1384588525 - - BnaCnng13090D [Brassica napus]
13 Hb_041813_030 0.1399407591 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
14 Hb_006040_010 0.1441455859 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
15 Hb_008085_020 0.1477393527 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
16 Hb_042463_020 0.1505641744 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004987_040 0.1532137783 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_004643_010 0.1584625561 - - cytochrome B, putative [Ricinus communis]
19 Hb_143004_010 0.160893389 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
20 Hb_077242_020 0.1669876665 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]

Gene co-expression network

sample Hb_013420_020 Hb_013420_020 Hb_012163_050 Hb_012163_050 Hb_013420_020--Hb_012163_050 Hb_156746_010 Hb_156746_010 Hb_013420_020--Hb_156746_010 Hb_006040_030 Hb_006040_030 Hb_013420_020--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_013420_020--Hb_171685_060 Hb_027357_010 Hb_027357_010 Hb_013420_020--Hb_027357_010 Hb_171685_080 Hb_171685_080 Hb_013420_020--Hb_171685_080 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_012163_050--Hb_042463_070 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_041813_030 Hb_041813_030 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_171685_060--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_171685_060--Hb_004643_010 Hb_171685_060--Hb_006040_030 Hb_171685_060--Hb_041813_030 Hb_027357_010--Hb_156746_010 Hb_027357_010--Hb_012163_050 Hb_027357_010--Hb_041813_030 Hb_171685_040 Hb_171685_040 Hb_027357_010--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_027357_010--Hb_013420_010 Hb_171685_080--Hb_006040_010 Hb_171685_080--Hb_006040_020 Hb_003688_030 Hb_003688_030 Hb_171685_080--Hb_003688_030 Hb_171685_080--Hb_013420_050 Hb_008085_020 Hb_008085_020 Hb_171685_080--Hb_008085_020 Hb_171685_080--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322729 0.184958 0 0 0.0324246 0.0285836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.210121 0.142432 7.45705

CAGE analysis