Hb_013420_010

Information

Type -
Description -
Location Contig13420: 2726-4193
Sequence    

Annotation

kegg
ID rcu:RCOM_1985520
description hypothetical protein
nr
ID XP_002534697.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T8X8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1985520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027357_010 0.1435807702 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_042463_020 0.1470860887 - - conserved hypothetical protein [Ricinus communis]
4 Hb_171685_040 0.1494702404 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
5 Hb_072212_020 0.1592648705 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
6 Hb_034168_070 0.1644702266 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
7 Hb_012163_050 0.1645072016 - - ATPase subunit [Medicago truncatula]
8 Hb_003125_100 0.1705797906 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
9 Hb_156746_010 0.1748022075 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
10 Hb_041813_030 0.176187107 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
11 Hb_042463_030 0.1764166731 - - unknown [Lotus japonicus]
12 Hb_013420_090 0.1781106101 - - BnaCnng13090D [Brassica napus]
13 Hb_101733_010 0.1800861394 - - conserved hypothetical protein [Ricinus communis]
14 Hb_171685_060 0.1802462237 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
15 Hb_002687_070 0.1825388447 - - polyprotein [Ananas comosus]
16 Hb_013420_120 0.1846432675 - - -
17 Hb_171685_020 0.1878252714 - - conserved hypothetical protein [Ricinus communis]
18 Hb_062273_010 0.1888079874 - - ATP synthase F0 subunit 9 [Chara vulgaris]
19 Hb_006040_050 0.1895069906 - - conserved hypothetical protein [Ricinus communis]
20 Hb_062192_030 0.1900896807 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_013420_010 Hb_013420_010 Hb_027357_010 Hb_027357_010 Hb_013420_010--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_010--Hb_042463_020 Hb_171685_040 Hb_171685_040 Hb_013420_010--Hb_171685_040 Hb_072212_020 Hb_072212_020 Hb_013420_010--Hb_072212_020 Hb_034168_070 Hb_034168_070 Hb_013420_010--Hb_034168_070 Hb_012163_050 Hb_012163_050 Hb_013420_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030 Hb_027357_010--Hb_171685_040 Hb_042463_020--Hb_034168_070 Hb_042463_020--Hb_156746_010 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_072212_020--Hb_062273_010 Hb_062192_030 Hb_062192_030 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_006040_030 Hb_006040_030 Hb_012163_050--Hb_006040_030 Hb_012163_050--Hb_042463_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107345 0.0354912 0.011178 0 0.013205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.10109 0.0107866 1.23784

CAGE analysis