Hb_005742_010

Information

Type -
Description -
Location Contig5742: 6556-8456
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005742_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_006040_050 0.1305506413 - - conserved hypothetical protein [Ricinus communis]
3 Hb_171685_040 0.173726259 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
4 Hb_171685_030 0.1914885036 - - URF-1 [Citrullus lanatus]
5 Hb_002482_050 0.1982313521 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
6 Hb_062192_060 0.2066922934 - - maturase (mitochondrion) [Hevea brasiliensis]
7 Hb_000245_120 0.2080633819 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
8 Hb_102602_030 0.2131771472 - - hypothetical protein (mitochondrion) [Vicia faba]
9 Hb_171685_020 0.2144734726 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006933_010 0.2212255851 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_142570_010 0.2257546343 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
12 Hb_004124_010 0.2274401923 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_154997_010 0.2321631171 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_013420_120 0.2328376386 - - -
15 Hb_151320_010 0.2359950587 - - -
16 Hb_002495_050 0.2376730926 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
17 Hb_001124_170 0.2381189905 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_002869_070 0.245441935 - - -
19 Hb_027357_010 0.2530130511 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002687_070 0.2551054167 - - polyprotein [Ananas comosus]

Gene co-expression network

sample Hb_005742_010 Hb_005742_010 Hb_006040_050 Hb_006040_050 Hb_005742_010--Hb_006040_050 Hb_171685_040 Hb_171685_040 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_002482_050 Hb_002482_050 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120 Hb_006040_050--Hb_171685_040 Hb_171685_020 Hb_171685_020 Hb_006040_050--Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_006040_050--Hb_002687_070 Hb_006040_050--Hb_002482_050 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_027357_010 Hb_027357_010 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_000159_020 Hb_000159_020 Hb_171685_030--Hb_000159_020 Hb_171685_030--Hb_102602_030 Hb_171685_030--Hb_062192_060 Hb_034455_010 Hb_034455_010 Hb_171685_030--Hb_034455_010 Hb_171685_030--Hb_171685_040 Hb_002482_050--Hb_062192_060 Hb_034197_020 Hb_034197_020 Hb_002482_050--Hb_034197_020 Hb_013420_090 Hb_013420_090 Hb_002482_050--Hb_013420_090 Hb_002482_050--Hb_027357_010 Hb_002482_050--Hb_002687_070 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_041813_080 Hb_041813_080 Hb_000245_120--Hb_041813_080 Hb_002073_110 Hb_002073_110 Hb_000245_120--Hb_002073_110 Hb_000245_120--Hb_006040_050 Hb_027010_030 Hb_027010_030 Hb_000245_120--Hb_027010_030 Hb_143769_010 Hb_143769_010 Hb_000245_120--Hb_143769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0095367 0 0.00899941 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0390135 0.00822898 0.130389

CAGE analysis