Hb_002482_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig2482: 79787-82868
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02891g
description POPTRDRAFT_558147; F-box family protein
nr
ID XP_002314220.1
description F-box family protein [Populus trichocarpa]
swissprot
ID Q8GX29
description F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1
trembl
ID B9HPR6
description F-box family protein OS=Populus trichocarpa GN=POPTR_0009s02891g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002482_050 0.0 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
2 Hb_062192_060 0.1269978444 - - maturase (mitochondrion) [Hevea brasiliensis]
3 Hb_034197_020 0.1600259973 - - hypothetical protein VITISV_041099 [Vitis vinifera]
4 Hb_013420_090 0.1676287182 - - BnaCnng13090D [Brassica napus]
5 Hb_006040_050 0.1738486665 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027357_010 0.1751855896 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_002687_070 0.1794622452 - - polyprotein [Ananas comosus]
8 Hb_003375_050 0.1842378828 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_171685_040 0.1869487037 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
10 Hb_000614_270 0.1949559139 - - -
11 Hb_171685_020 0.1960583626 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005742_010 0.1982313521 - - hypothetical protein, partial [Pseudomonas fluorescens]
13 Hb_005154_090 0.1991857678 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_003746_020 0.2042263979 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
15 Hb_143004_010 0.2056983647 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
16 Hb_049285_010 0.2084705811 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_102602_030 0.2131399289 - - hypothetical protein (mitochondrion) [Vicia faba]
18 Hb_042463_070 0.2135688307 - - 60S ribosomal protein L16, putative [Ricinus communis]
19 Hb_041813_050 0.2143322749 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
20 Hb_147604_010 0.2178274423 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_002482_050 Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_002482_050--Hb_062192_060 Hb_034197_020 Hb_034197_020 Hb_002482_050--Hb_034197_020 Hb_013420_090 Hb_013420_090 Hb_002482_050--Hb_013420_090 Hb_006040_050 Hb_006040_050 Hb_002482_050--Hb_006040_050 Hb_027357_010 Hb_027357_010 Hb_002482_050--Hb_027357_010 Hb_002687_070 Hb_002687_070 Hb_002482_050--Hb_002687_070 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_003375_050 Hb_003375_050 Hb_034197_020--Hb_003375_050 Hb_000803_230 Hb_000803_230 Hb_034197_020--Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_034197_020--Hb_005920_030 Hb_000567_270 Hb_000567_270 Hb_034197_020--Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_034197_020--Hb_003311_020 Hb_012163_050 Hb_012163_050 Hb_013420_090--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_013420_090--Hb_013420_020 Hb_013420_050 Hb_013420_050 Hb_013420_090--Hb_013420_050 Hb_000405_010 Hb_000405_010 Hb_013420_090--Hb_000405_010 Hb_013420_090--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_090--Hb_042463_020 Hb_005742_010 Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_171685_040 Hb_171685_040 Hb_006040_050--Hb_171685_040 Hb_171685_020 Hb_171685_020 Hb_006040_050--Hb_171685_020 Hb_006040_050--Hb_002687_070 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030 Hb_027357_010--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_027357_010--Hb_013420_010 Hb_002687_070--Hb_171685_020 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172596 0 0.014553 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0322434 0.0472845 0.395311

CAGE analysis