Hb_006040_050

Information

Type -
Description -
Location Contig6040: 22833-23620
Sequence    

Annotation

kegg
ID rcu:RCOM_2025420
description hypothetical protein
nr
ID XP_002534745.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T926
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2025420 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50692: 23095-24401 , PASA_asmbl_50693: 24425-25530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005742_010 0.1305506413 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_171685_040 0.1351357133 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
4 Hb_171685_020 0.1470327669 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002687_070 0.1652372649 - - polyprotein [Ananas comosus]
6 Hb_002482_050 0.1738486665 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
7 Hb_013420_120 0.1871069302 - - -
8 Hb_013420_010 0.1895069906 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027357_010 0.1910843679 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_062192_060 0.2091522993 - - maturase (mitochondrion) [Hevea brasiliensis]
11 Hb_102602_030 0.2105816535 - - hypothetical protein (mitochondrion) [Vicia faba]
12 Hb_072212_020 0.2132478807 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
13 Hb_053079_010 0.231917822 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_013420_090 0.2324312919 - - BnaCnng13090D [Brassica napus]
15 Hb_171685_030 0.2385998172 - - URF-1 [Citrullus lanatus]
16 Hb_102602_010 0.2417000552 - - orf175 (mitochondrion) [Panax ginseng]
17 Hb_147604_010 0.2435454584 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_002598_030 0.2440901312 - - -
19 Hb_003406_030 0.2450941742 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
20 Hb_012163_050 0.2453149413 - - ATPase subunit [Medicago truncatula]

Gene co-expression network

sample Hb_006040_050 Hb_006040_050 Hb_005742_010 Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_171685_040 Hb_171685_040 Hb_006040_050--Hb_171685_040 Hb_171685_020 Hb_171685_020 Hb_006040_050--Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_006040_050--Hb_002687_070 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_027357_010 Hb_027357_010 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_171685_020--Hb_002687_070 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_020--Hb_171685_040 Hb_171685_020--Hb_013420_010 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030 Hb_002482_050--Hb_062192_060 Hb_034197_020 Hb_034197_020 Hb_002482_050--Hb_034197_020 Hb_002482_050--Hb_013420_090 Hb_002482_050--Hb_027357_010 Hb_002482_050--Hb_002687_070 Hb_151320_010 Hb_151320_010 Hb_013420_120--Hb_151320_010 Hb_013420_120--Hb_013420_010 Hb_013420_120--Hb_171685_040 Hb_013420_120--Hb_027357_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.295462 0 0.123726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.347285 0.0847273 2.30018

CAGE analysis