Hb_013420_090

Information

Type -
Description -
Location Contig13420: 13831-14435
Sequence    

Annotation

kegg
ID rcu:RCOM_2058780
description NADH-ubiquinone oxidoreductase fe-s protein, putative (EC:1.6.5.3)
nr
ID CDY45550.1
description BnaCnng13090D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078I428
description BnaCnng13090D protein OS=Brassica napus GN=BnaCnng13090D PE=4 SV=1
Gene Ontology
ID GO:0016651
description nadh dehydrogenase subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09723: 12896-14151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_090 0.0 - - BnaCnng13090D [Brassica napus]
2 Hb_012163_050 0.1285241906 - - ATPase subunit [Medicago truncatula]
3 Hb_013420_020 0.1384588525 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013420_050 0.1440355001 - - hypothetical protein (mitochondrion) [Vicia faba]
5 Hb_000405_010 0.1482556011 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
6 Hb_027357_010 0.1493249091 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_042463_020 0.1517893837 - - conserved hypothetical protein [Ricinus communis]
8 Hb_156746_010 0.1525757099 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
9 Hb_143004_010 0.1532123727 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
10 Hb_171685_060 0.1535491833 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
11 Hb_054127_020 0.156037892 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
12 Hb_042463_030 0.1574654405 - - unknown [Lotus japonicus]
13 Hb_042463_070 0.1577674717 - - 60S ribosomal protein L16, putative [Ricinus communis]
14 Hb_004375_020 0.1597187231 - - hypothetical protein VITISV_034560 [Vitis vinifera]
15 Hb_002482_050 0.1676287182 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
16 Hb_002687_070 0.1689305719 - - polyprotein [Ananas comosus]
17 Hb_171685_020 0.1730547094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011931_090 0.1733728981 - - -
19 Hb_004987_040 0.1739986556 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_004445_030 0.1752657325 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013420_090 Hb_013420_090 Hb_012163_050 Hb_012163_050 Hb_013420_090--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_013420_090--Hb_013420_020 Hb_013420_050 Hb_013420_050 Hb_013420_090--Hb_013420_050 Hb_000405_010 Hb_000405_010 Hb_013420_090--Hb_000405_010 Hb_027357_010 Hb_027357_010 Hb_013420_090--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_090--Hb_042463_020 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_006040_030 Hb_006040_030 Hb_012163_050--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_012163_050--Hb_042463_070 Hb_013420_020--Hb_156746_010 Hb_013420_020--Hb_006040_030 Hb_013420_020--Hb_171685_060 Hb_013420_020--Hb_027357_010 Hb_171685_080 Hb_171685_080 Hb_013420_020--Hb_171685_080 Hb_013420_050--Hb_156746_010 Hb_006040_020 Hb_006040_020 Hb_013420_050--Hb_006040_020 Hb_013420_050--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_013420_050--Hb_006040_010 Hb_013420_050--Hb_042463_070 Hb_013420_050--Hb_006040_030 Hb_011931_090 Hb_011931_090 Hb_000405_010--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_000522_030 Hb_000522_030 Hb_000405_010--Hb_000522_030 Hb_150516_010 Hb_150516_010 Hb_000405_010--Hb_150516_010 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010 Hb_027357_010--Hb_156746_010 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030 Hb_171685_040 Hb_171685_040 Hb_027357_010--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_027357_010--Hb_013420_010 Hb_034168_070 Hb_034168_070 Hb_042463_020--Hb_034168_070 Hb_042463_020--Hb_156746_010 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_020--Hb_042463_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237047 0.0504924 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.200489 0.302903 5.08104

CAGE analysis