Hb_027917_010

Information

Type -
Description -
Location Contig27917: 1343-2700
Sequence    

Annotation

kegg
ID pda:103699089
description uncharacterized LOC103699089
nr
ID XP_008779360.1
description PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027917_010 0.0 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
2 Hb_009355_010 0.1086433608 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
3 Hb_139605_010 0.1241604908 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_000405_010 0.1242679661 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
5 Hb_032733_030 0.1461474533 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
6 Hb_011931_090 0.1467223009 - - -
7 Hb_054127_020 0.1561306684 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
8 Hb_003169_040 0.1612861467 - - -
9 Hb_005623_060 0.1615698244 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000432_020 0.1618895725 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_150516_010 0.163173441 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
12 Hb_004445_030 0.1635063684 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001383_080 0.1669778919 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
14 Hb_002576_010 0.1703566535 - - -
15 Hb_000522_030 0.1752281277 - - hypothetical protein VITISV_006017 [Vitis vinifera]
16 Hb_047923_030 0.1760610263 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
17 Hb_004375_020 0.1762255828 - - hypothetical protein VITISV_034560 [Vitis vinifera]
18 Hb_004052_130 0.1780154973 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
19 Hb_032717_090 0.1896272653 - - conserved hypothetical protein [Ricinus communis]
20 Hb_013420_090 0.1896283778 - - BnaCnng13090D [Brassica napus]

Gene co-expression network

sample Hb_027917_010 Hb_027917_010 Hb_009355_010 Hb_009355_010 Hb_027917_010--Hb_009355_010 Hb_139605_010 Hb_139605_010 Hb_027917_010--Hb_139605_010 Hb_000405_010 Hb_000405_010 Hb_027917_010--Hb_000405_010 Hb_032733_030 Hb_032733_030 Hb_027917_010--Hb_032733_030 Hb_011931_090 Hb_011931_090 Hb_027917_010--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_027917_010--Hb_054127_020 Hb_004052_130 Hb_004052_130 Hb_009355_010--Hb_004052_130 Hb_004445_030 Hb_004445_030 Hb_009355_010--Hb_004445_030 Hb_004375_020 Hb_004375_020 Hb_009355_010--Hb_004375_020 Hb_000373_140 Hb_000373_140 Hb_009355_010--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_009355_010--Hb_004987_040 Hb_002576_010 Hb_002576_010 Hb_139605_010--Hb_002576_010 Hb_139605_010--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_139605_010--Hb_047923_030 Hb_000923_110 Hb_000923_110 Hb_139605_010--Hb_000923_110 Hb_006356_030 Hb_006356_030 Hb_139605_010--Hb_006356_030 Hb_000405_010--Hb_011931_090 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_000522_030 Hb_000522_030 Hb_000405_010--Hb_000522_030 Hb_150516_010 Hb_150516_010 Hb_000405_010--Hb_150516_010 Hb_032733_030--Hb_000522_030 Hb_012528_040 Hb_012528_040 Hb_032733_030--Hb_012528_040 Hb_014109_020 Hb_014109_020 Hb_032733_030--Hb_014109_020 Hb_000135_080 Hb_000135_080 Hb_032733_030--Hb_000135_080 Hb_005623_060 Hb_005623_060 Hb_032733_030--Hb_005623_060 Hb_005678_030 Hb_005678_030 Hb_032733_030--Hb_005678_030 Hb_011931_090--Hb_000522_030 Hb_011931_090--Hb_150516_010 Hb_011931_090--Hb_005623_060 Hb_011931_090--Hb_014109_020 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030 Hb_054127_020--Hb_006356_030 Hb_054127_020--Hb_000923_110 Hb_054127_020--Hb_004445_030 Hb_054127_020--Hb_002576_010 Hb_054127_020--Hb_047923_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0845325 0.0222725 0 0.0296984 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0866503 0.966081

CAGE analysis