Hb_005623_060

Information

Type -
Description -
Location Contig5623: 100109-104577
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005623_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000512_050 0.0596913555 - - hypothetical protein VITISV_005640 [Vitis vinifera]
3 Hb_150516_010 0.0795690171 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
4 Hb_003169_040 0.0912054867 - - -
5 Hb_000522_030 0.1055768279 - - hypothetical protein VITISV_006017 [Vitis vinifera]
6 Hb_080033_020 0.1103958203 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
7 Hb_014109_020 0.1203475846 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
8 Hb_011931_090 0.1222702838 - - -
9 Hb_180214_010 0.1299310572 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_000405_010 0.1369541551 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
11 Hb_001383_080 0.139048564 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
12 Hb_032733_030 0.1411510416 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
13 Hb_006040_150 0.1430019375 - - -
14 Hb_003302_010 0.1534964409 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
15 Hb_023738_010 0.1564070259 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
16 Hb_000432_020 0.1572762971 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
17 Hb_027917_010 0.1615698244 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
18 Hb_000826_080 0.1617739702 - - -
19 Hb_001355_050 0.1686492038 - - -
20 Hb_012528_040 0.1707533986 - - -

Gene co-expression network

sample Hb_005623_060 Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_005623_060--Hb_000512_050 Hb_150516_010 Hb_150516_010 Hb_005623_060--Hb_150516_010 Hb_003169_040 Hb_003169_040 Hb_005623_060--Hb_003169_040 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_080033_020 Hb_080033_020 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_000512_050--Hb_080033_020 Hb_000512_050--Hb_003169_040 Hb_180214_010 Hb_180214_010 Hb_000512_050--Hb_180214_010 Hb_000512_050--Hb_150516_010 Hb_003302_010 Hb_003302_010 Hb_000512_050--Hb_003302_010 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_003169_040--Hb_180214_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_003169_040--Hb_003900_040 Hb_000522_030--Hb_011931_090 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_000135_080 Hb_000135_080 Hb_000522_030--Hb_000135_080 Hb_000522_030--Hb_000405_010 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_080033_020--Hb_003169_040 Hb_012528_040 Hb_012528_040 Hb_014109_020--Hb_012528_040 Hb_014109_020--Hb_000522_030 Hb_004375_020 Hb_004375_020 Hb_014109_020--Hb_004375_020 Hb_002630_030 Hb_002630_030 Hb_014109_020--Hb_002630_030 Hb_014109_020--Hb_011931_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00368828 0.00331683 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00316758 0.0343123

CAGE analysis