Hb_080033_020

Information

Type -
Description -
Location Contig80033: 49-1008
Sequence    

Annotation

kegg
ID vvi:100855076
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010658126.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID F6HK89
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00080 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080033_020 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
2 Hb_000512_050 0.0706876872 - - hypothetical protein VITISV_005640 [Vitis vinifera]
3 Hb_005623_060 0.1103958203 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003302_010 0.1270390272 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
5 Hb_001587_050 0.1341851675 - - -
6 Hb_004407_030 0.1499087225 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
7 Hb_003169_040 0.151801154 - - -
8 Hb_089568_010 0.1531248748 - - ferric reductase oxidase [Manihot esculenta]
9 Hb_144045_010 0.1543609279 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
10 Hb_180214_010 0.1562298109 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
11 Hb_023738_010 0.1609733537 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
12 Hb_000826_080 0.1615539149 - - -
13 Hb_073467_010 0.1622245637 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
14 Hb_004924_040 0.1633811245 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_003058_160 0.1634551271 - - conserved hypothetical protein [Ricinus communis]
16 Hb_014109_020 0.1646091797 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
17 Hb_150516_010 0.1712905895 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
18 Hb_141990_030 0.1742618995 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
19 Hb_005736_080 0.1754822355 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_001105_140 0.1780027257 - - Alpha-expansin 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_080033_020 Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_080033_020--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_080033_020--Hb_005623_060 Hb_003302_010 Hb_003302_010 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_003169_040 Hb_003169_040 Hb_080033_020--Hb_003169_040 Hb_000512_050--Hb_005623_060 Hb_000512_050--Hb_003169_040 Hb_180214_010 Hb_180214_010 Hb_000512_050--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_000512_050--Hb_150516_010 Hb_000512_050--Hb_003302_010 Hb_005623_060--Hb_150516_010 Hb_005623_060--Hb_003169_040 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_023738_010 Hb_023738_010 Hb_003302_010--Hb_023738_010 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_005092_090 Hb_005092_090 Hb_003302_010--Hb_005092_090 Hb_000060_130 Hb_000060_130 Hb_003302_010--Hb_000060_130 Hb_089568_010 Hb_089568_010 Hb_001587_050--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_001587_050--Hb_006356_010 Hb_001587_050--Hb_144045_010 Hb_000042_310 Hb_000042_310 Hb_001587_050--Hb_000042_310 Hb_090889_010 Hb_090889_010 Hb_001587_050--Hb_090889_010 Hb_028227_050 Hb_028227_050 Hb_004407_030--Hb_028227_050 Hb_168319_040 Hb_168319_040 Hb_004407_030--Hb_168319_040 Hb_001671_130 Hb_001671_130 Hb_004407_030--Hb_001671_130 Hb_001832_180 Hb_001832_180 Hb_004407_030--Hb_001832_180 Hb_009093_020 Hb_009093_020 Hb_004407_030--Hb_009093_020 Hb_000282_100 Hb_000282_100 Hb_004407_030--Hb_000282_100 Hb_003169_040--Hb_180214_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_003169_040--Hb_003900_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0411535 0.0554609 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0179147 0.270987

CAGE analysis