Hb_180214_010

Information

Type -
Description -
Location Contig180214: 1388-2932
Sequence    

Annotation

kegg
ID mtr:MTR_3g043850
description hypothetical protein
nr
ID XP_012065777.1
description PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180214_010 0.0 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
2 Hb_003169_040 0.1166077413 - - -
3 Hb_000512_050 0.1191095847 - - hypothetical protein VITISV_005640 [Vitis vinifera]
4 Hb_032717_090 0.122625293 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003900_040 0.122758186 - - hypothetical protein [Lotus japonicus]
6 Hb_005623_060 0.1299310572 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001383_080 0.1383249299 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
8 Hb_150516_010 0.1511205525 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
9 Hb_080033_020 0.1562298109 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
10 Hb_004899_210 0.1618360836 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
11 Hb_003302_010 0.1634289851 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
12 Hb_023738_010 0.1688443254 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
13 Hb_144027_010 0.1692678718 - - -
14 Hb_006040_150 0.1697552889 - - -
15 Hb_008642_050 0.1714016401 - - -
16 Hb_001355_050 0.1757127398 - - -
17 Hb_007543_020 0.1771773138 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_094002_010 0.1860725234 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
19 Hb_003414_040 0.1865851503 - - hypothetical protein VITISV_016691 [Vitis vinifera]
20 Hb_000346_050 0.1882456728 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_180214_010 Hb_180214_010 Hb_003169_040 Hb_003169_040 Hb_180214_010--Hb_003169_040 Hb_000512_050 Hb_000512_050 Hb_180214_010--Hb_000512_050 Hb_032717_090 Hb_032717_090 Hb_180214_010--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_180214_010--Hb_003900_040 Hb_005623_060 Hb_005623_060 Hb_180214_010--Hb_005623_060 Hb_001383_080 Hb_001383_080 Hb_180214_010--Hb_001383_080 Hb_003169_040--Hb_000512_050 Hb_003169_040--Hb_005623_060 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010 Hb_003169_040--Hb_032717_090 Hb_003169_040--Hb_003900_040 Hb_000512_050--Hb_005623_060 Hb_080033_020 Hb_080033_020 Hb_000512_050--Hb_080033_020 Hb_000512_050--Hb_150516_010 Hb_003302_010 Hb_003302_010 Hb_000512_050--Hb_003302_010 Hb_032717_090--Hb_003900_040 Hb_008680_010 Hb_008680_010 Hb_032717_090--Hb_008680_010 Hb_032717_090--Hb_001383_080 Hb_004235_020 Hb_004235_020 Hb_032717_090--Hb_004235_020 Hb_004899_210 Hb_004899_210 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030 Hb_005623_060--Hb_150516_010 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_003414_040 Hb_003414_040 Hb_001383_080--Hb_003414_040 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_000432_020 Hb_000432_020 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_001383_080--Hb_003900_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0790015 0.0405231 0 0 0.01162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0473791 0.397954

CAGE analysis