Hb_000346_050

Information

Type -
Description -
Location Contig346: 41680-43452
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID XP_010684010.1
description PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M1BPI1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1
Gene Ontology
ID GO:0016772
description kinase protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000346_050 0.0 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
2 Hb_043792_030 0.0680997428 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_019654_170 0.0728472956 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
4 Hb_001856_280 0.0958860209 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_003927_020 0.1157467763 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
6 Hb_150516_010 0.1243752089 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
7 Hb_000167_070 0.1294076044 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_000803_230 0.1302620561 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
9 Hb_005920_030 0.1322633294 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_001383_080 0.133166388 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
11 Hb_003311_020 0.1344812016 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001880_020 0.1466744564 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_001355_050 0.1488480111 - - -
14 Hb_020831_070 0.1504289528 - - hypothetical protein VITISV_027174 [Vitis vinifera]
15 Hb_008055_030 0.1526392443 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_001250_030 0.1529890253 - - conserved hypothetical protein [Ricinus communis]
17 Hb_056506_080 0.1542761565 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
18 Hb_003994_070 0.1601812909 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_000522_030 0.161086647 - - hypothetical protein VITISV_006017 [Vitis vinifera]
20 Hb_134377_070 0.1627122091 - - -

Gene co-expression network

sample Hb_000346_050 Hb_000346_050 Hb_043792_030 Hb_043792_030 Hb_000346_050--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_000346_050--Hb_019654_170 Hb_001856_280 Hb_001856_280 Hb_000346_050--Hb_001856_280 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_043792_030--Hb_001856_280 Hb_043792_030--Hb_019654_170 Hb_020831_070 Hb_020831_070 Hb_043792_030--Hb_020831_070 Hb_005920_030 Hb_005920_030 Hb_043792_030--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_043792_030--Hb_003311_020 Hb_019654_170--Hb_001856_280 Hb_019654_170--Hb_005920_030 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070 Hb_001856_280--Hb_005920_030 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_001880_020 Hb_001355_050 Hb_001355_050 Hb_003927_020--Hb_001355_050 Hb_005595_030 Hb_005595_030 Hb_003927_020--Hb_005595_030 Hb_006992_030 Hb_006992_030 Hb_003927_020--Hb_006992_030 Hb_005623_060 Hb_005623_060 Hb_150516_010--Hb_005623_060 Hb_000522_030 Hb_000522_030 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_150516_010--Hb_019654_170 Hb_000167_070--Hb_001880_020 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010 Hb_000167_070--Hb_005595_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.189935 0.056241 0.0206755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.326047 1.30248

CAGE analysis