Hb_001355_050

Information

Type -
Description -
Location Contig1355: 37747-38037
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001355_050 0.0 - - -
2 Hb_005595_030 0.0757495765 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
3 Hb_003927_020 0.0913705305 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
4 Hb_006992_030 0.0919477854 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_150516_010 0.1266087302 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
6 Hb_001880_020 0.1361798255 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
7 Hb_043792_030 0.141826526 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_094002_010 0.1433379344 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_000346_050 0.1488480111 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_000167_070 0.1606536114 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_019654_170 0.160852682 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
12 Hb_003302_010 0.1622259882 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
13 Hb_001856_280 0.1626588831 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_089568_010 0.1643897809 - - ferric reductase oxidase [Manihot esculenta]
15 Hb_020831_070 0.1681783188 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_005623_060 0.1686492038 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_180214_010 0.1757127398 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_005765_020 0.1758739637 - - -
19 Hb_000512_050 0.1794701895 - - hypothetical protein VITISV_005640 [Vitis vinifera]
20 Hb_000522_030 0.1888197287 - - hypothetical protein VITISV_006017 [Vitis vinifera]

Gene co-expression network

sample Hb_001355_050 Hb_001355_050 Hb_005595_030 Hb_005595_030 Hb_001355_050--Hb_005595_030 Hb_003927_020 Hb_003927_020 Hb_001355_050--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001880_020 Hb_001880_020 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_005595_030--Hb_001880_020 Hb_005595_030--Hb_003927_020 Hb_005595_030--Hb_006992_030 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010 Hb_000167_070 Hb_000167_070 Hb_005595_030--Hb_000167_070 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_001880_020 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_005765_020 Hb_005765_020 Hb_006992_030--Hb_005765_020 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_006992_030--Hb_001880_020 Hb_005623_060 Hb_005623_060 Hb_150516_010--Hb_005623_060 Hb_000522_030 Hb_000522_030 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_001880_020--Hb_000167_070 Hb_001856_280 Hb_001856_280 Hb_001880_020--Hb_001856_280 Hb_001880_020--Hb_043792_030 Hb_043792_030--Hb_001856_280 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_020831_070 Hb_020831_070 Hb_043792_030--Hb_020831_070 Hb_005920_030 Hb_005920_030 Hb_043792_030--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_043792_030--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161934 0.160027 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.297005 0.967474

CAGE analysis