Hb_001856_280

Information

Type -
Description -
Location Contig1856: 322354-325050
Sequence    

Annotation

kegg
ID rcu:RCOM_0917060
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012084846.1
description PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID A0A067JWX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19972 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_I20.ab1: 322259-323008 , 038_D04.ab1: 322294-323102

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_280 0.0 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
2 Hb_043792_030 0.0455794033 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_019654_170 0.0905584667 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
4 Hb_000346_050 0.0958860209 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_005920_030 0.10376724 - - putative polyprotein [Oryza sativa Japonica Group]
6 Hb_020831_070 0.10888239 - - hypothetical protein VITISV_027174 [Vitis vinifera]
7 Hb_001880_020 0.1215430896 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_000167_070 0.123733928 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_008055_030 0.1255969804 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_006455_020 0.130076893 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
11 Hb_003927_020 0.1301600246 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
12 Hb_000260_730 0.136794694 - - -
13 Hb_000567_270 0.1378648978 - - hypothetical protein L484_017162 [Morus notabilis]
14 Hb_008834_010 0.1389092191 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
15 Hb_003311_020 0.140652322 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005595_030 0.1457849811 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
17 Hb_035651_010 0.1494179488 - - receptor-kinase, putative [Ricinus communis]
18 Hb_004520_010 0.1521970981 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_002016_130 0.1551896761 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
20 Hb_003994_070 0.1626370988 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001856_280 Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_001856_280--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_005920_030 Hb_005920_030 Hb_001856_280--Hb_005920_030 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_043792_030--Hb_003311_020 Hb_019654_170--Hb_000346_050 Hb_019654_170--Hb_005920_030 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_005920_030--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_020831_070--Hb_003311_020 Hb_001880_020--Hb_000167_070 Hb_005595_030 Hb_005595_030 Hb_001880_020--Hb_005595_030 Hb_001880_020--Hb_003927_020 Hb_001880_020--Hb_043792_030 Hb_001355_050 Hb_001355_050 Hb_001880_020--Hb_001355_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232284 17.4441 11.1294 6.63515 0.0627633 0.00626911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0488283 0.0128077 0 60.8013 170.214

CAGE analysis