Hb_020831_070

Information

Type -
Description -
Location Contig20831: 74254-80481
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID CAN75041.1
description hypothetical protein VITISV_027174 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020831_070 0.0 - - hypothetical protein VITISV_027174 [Vitis vinifera]
2 Hb_006455_020 0.0839048327 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
3 Hb_043792_030 0.092500972 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
4 Hb_001856_280 0.10888239 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_019654_170 0.1229183136 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
6 Hb_035651_010 0.1250584392 - - receptor-kinase, putative [Ricinus communis]
7 Hb_003311_020 0.1280993169 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005678_030 0.1320700959 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
9 Hb_005920_030 0.1338533819 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_002016_130 0.1405949023 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_001793_040 0.143742127 - - hypothetical protein VITISV_006810 [Vitis vinifera]
12 Hb_009851_090 0.1448371581 - - Protein ABIL2, putative [Ricinus communis]
13 Hb_000644_020 0.145221808 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_001345_040 0.1454473435 - - hypothetical protein VITISV_015004 [Vitis vinifera]
15 Hb_004520_010 0.1483091535 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_004312_020 0.1484588031 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000567_270 0.1497970793 - - hypothetical protein L484_017162 [Morus notabilis]
18 Hb_000346_050 0.1504289528 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_077151_010 0.1504428667 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_000260_730 0.1521677989 - - -

Gene co-expression network

sample Hb_020831_070 Hb_020831_070 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_043792_030 Hb_043792_030 Hb_020831_070--Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_020831_070--Hb_001856_280 Hb_019654_170 Hb_019654_170 Hb_020831_070--Hb_019654_170 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_003311_020 Hb_003311_020 Hb_020831_070--Hb_003311_020 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000644_020 Hb_000644_020 Hb_006455_020--Hb_000644_020 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_043792_030--Hb_001856_280 Hb_000346_050 Hb_000346_050 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_005920_030 Hb_005920_030 Hb_043792_030--Hb_005920_030 Hb_043792_030--Hb_003311_020 Hb_001856_280--Hb_019654_170 Hb_001856_280--Hb_000346_050 Hb_001856_280--Hb_005920_030 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_019654_170--Hb_000346_050 Hb_019654_170--Hb_005920_030 Hb_019654_170--Hb_003311_020 Hb_004520_010 Hb_004520_010 Hb_035651_010--Hb_004520_010 Hb_004312_020 Hb_004312_020 Hb_035651_010--Hb_004312_020 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_035651_010--Hb_005920_030 Hb_003311_020--Hb_003994_070 Hb_000567_270 Hb_000567_270 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_003311_020--Hb_009851_090 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00981197 0.0146808 0.00760235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0281486 0.11216

CAGE analysis