Hb_000476_030

Information

Type -
Description -
Location Contig476: 42847-43362
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15370g
description POPTRDRAFT_556920; hypothetical protein
nr
ID XP_012066335.1
description PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HQJ4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s15370g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44501: 43130-43460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000476_030 0.0 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
2 Hb_000135_080 0.0550878346 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
3 Hb_005678_030 0.0835090239 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
4 Hb_000522_030 0.0960422805 - - hypothetical protein VITISV_006017 [Vitis vinifera]
5 Hb_006455_020 0.1070308828 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_005029_030 0.1080184188 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
7 Hb_000858_050 0.1210383815 - - kinase, putative [Ricinus communis]
8 Hb_077151_010 0.1291026077 - - ankyrin repeat protein [Bruguiera gymnorhiza]
9 Hb_001001_130 0.1317535014 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
10 Hb_001856_290 0.1349823409 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
11 Hb_012528_040 0.1354304026 - - -
12 Hb_001231_020 0.1381453156 - - -
13 Hb_106274_010 0.139203551 - - hypothetical protein VITISV_008825 [Vitis vinifera]
14 Hb_005551_030 0.1392398933 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
15 Hb_014109_020 0.1414720068 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
16 Hb_005666_030 0.1419391856 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
17 Hb_001699_020 0.1421113152 - - hypothetical protein L484_026849 [Morus notabilis]
18 Hb_004968_090 0.1423726547 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
19 Hb_001691_130 0.144425329 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
20 Hb_032733_030 0.144804235 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000476_030 Hb_000476_030 Hb_000135_080 Hb_000135_080 Hb_000476_030--Hb_000135_080 Hb_005678_030 Hb_005678_030 Hb_000476_030--Hb_005678_030 Hb_000522_030 Hb_000522_030 Hb_000476_030--Hb_000522_030 Hb_006455_020 Hb_006455_020 Hb_000476_030--Hb_006455_020 Hb_005029_030 Hb_005029_030 Hb_000476_030--Hb_005029_030 Hb_000858_050 Hb_000858_050 Hb_000476_030--Hb_000858_050 Hb_000135_080--Hb_005678_030 Hb_001001_130 Hb_001001_130 Hb_000135_080--Hb_001001_130 Hb_001856_290 Hb_001856_290 Hb_000135_080--Hb_001856_290 Hb_012528_040 Hb_012528_040 Hb_000135_080--Hb_012528_040 Hb_000135_080--Hb_000858_050 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_005678_030--Hb_006455_020 Hb_000441_080 Hb_000441_080 Hb_005678_030--Hb_000441_080 Hb_011931_090 Hb_011931_090 Hb_000522_030--Hb_011931_090 Hb_150516_010 Hb_150516_010 Hb_000522_030--Hb_150516_010 Hb_005623_060 Hb_005623_060 Hb_000522_030--Hb_005623_060 Hb_000522_030--Hb_000135_080 Hb_000405_010 Hb_000405_010 Hb_000522_030--Hb_000405_010 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000644_020 Hb_000644_020 Hb_006455_020--Hb_000644_020 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_015817_010 Hb_015817_010 Hb_005029_030--Hb_015817_010 Hb_005029_030--Hb_000858_050 Hb_000270_040 Hb_000270_040 Hb_005029_030--Hb_000270_040 Hb_080791_010 Hb_080791_010 Hb_005029_030--Hb_080791_010 Hb_005029_030--Hb_000135_080 Hb_015807_020 Hb_015807_020 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.834485 5.15051 1.07937 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.56813 39.221

CAGE analysis