Hb_005029_030

Information

Type -
Description -
Location Contig5029: 39797-40510
Sequence    

Annotation

kegg
ID rcu:RCOM_0670360
description Repetitive proline-rich cell wall protein 2 precursor, putative
nr
ID XP_011100461.1
description PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
swissprot
ID Q9SU34
description pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 SV=1
trembl
ID B9S3J8
description Repetitive proline-rich cell wall protein 2, putative OS=Ricinus communis GN=RCOM_0670360 PE=4 SV=1
Gene Ontology
ID GO:0005199
description kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_M10.ab1: 39773-40464 , 016_E19.ab1: 39778-40486 , 021_K18.ab1: 39818-40292

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005029_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
2 Hb_015817_010 0.0930701033 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
3 Hb_000858_050 0.0957584783 - - kinase, putative [Ricinus communis]
4 Hb_000270_040 0.1052291658 - - conserved hypothetical protein [Ricinus communis]
5 Hb_080791_010 0.1069060126 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
6 Hb_000476_030 0.1080184188 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
7 Hb_000135_080 0.1110315953 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_052139_010 0.1147103685 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
9 Hb_002041_020 0.1173872817 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_001001_130 0.1175072016 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
11 Hb_000367_150 0.1270117742 - - -
12 Hb_004010_080 0.1275156094 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_001691_130 0.1299943663 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
14 Hb_002630_030 0.1306381323 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
15 Hb_000026_060 0.1306415348 - - beta-1,3-glucanase [Manihot esculenta]
16 Hb_001856_290 0.1330768912 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
17 Hb_015807_020 0.1357833168 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_007456_030 0.1368746181 - - -
19 Hb_001231_020 0.1389594092 - - -
20 Hb_000018_130 0.1411159763 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005029_030 Hb_005029_030 Hb_015817_010 Hb_015817_010 Hb_005029_030--Hb_015817_010 Hb_000858_050 Hb_000858_050 Hb_005029_030--Hb_000858_050 Hb_000270_040 Hb_000270_040 Hb_005029_030--Hb_000270_040 Hb_080791_010 Hb_080791_010 Hb_005029_030--Hb_080791_010 Hb_000476_030 Hb_000476_030 Hb_005029_030--Hb_000476_030 Hb_000135_080 Hb_000135_080 Hb_005029_030--Hb_000135_080 Hb_043935_010 Hb_043935_010 Hb_015817_010--Hb_043935_010 Hb_015817_010--Hb_080791_010 Hb_006147_020 Hb_006147_020 Hb_015817_010--Hb_006147_020 Hb_000026_060 Hb_000026_060 Hb_015817_010--Hb_000026_060 Hb_004459_050 Hb_004459_050 Hb_015817_010--Hb_004459_050 Hb_015807_020 Hb_015807_020 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050 Hb_004855_030 Hb_004855_030 Hb_000270_040--Hb_004855_030 Hb_000083_010 Hb_000083_010 Hb_000270_040--Hb_000083_010 Hb_052139_010 Hb_052139_010 Hb_000270_040--Hb_052139_010 Hb_003208_010 Hb_003208_010 Hb_000270_040--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_000270_040--Hb_000977_260 Hb_101097_010 Hb_101097_010 Hb_000270_040--Hb_101097_010 Hb_080791_010--Hb_000026_060 Hb_080791_010--Hb_006147_020 Hb_002041_020 Hb_002041_020 Hb_080791_010--Hb_002041_020 Hb_080791_010--Hb_043935_010 Hb_080791_010--Hb_000858_050 Hb_000476_030--Hb_000135_080 Hb_005678_030 Hb_005678_030 Hb_000476_030--Hb_005678_030 Hb_000522_030 Hb_000522_030 Hb_000476_030--Hb_000522_030 Hb_006455_020 Hb_006455_020 Hb_000476_030--Hb_006455_020 Hb_000476_030--Hb_000858_050 Hb_000135_080--Hb_005678_030 Hb_001001_130 Hb_001001_130 Hb_000135_080--Hb_001001_130 Hb_001856_290 Hb_001856_290 Hb_000135_080--Hb_001856_290 Hb_012528_040 Hb_012528_040 Hb_000135_080--Hb_012528_040 Hb_000135_080--Hb_000858_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27699 328.674 68.2939 0 0.0441153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18071 0.0618822 0.110664 141.809 1862.84

CAGE analysis