Hb_101097_010

Information

Type -
Description -
Location Contig101097: 124-1692
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101097_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_004807_040 0.0599284096 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
3 Hb_013405_240 0.0648303732 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
4 Hb_007416_250 0.065767036 - - -
5 Hb_000530_060 0.065932851 - - -
6 Hb_000029_150 0.0675396642 - - conserved hypothetical protein [Ricinus communis]
7 Hb_158597_010 0.0687290739 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_005736_030 0.0695765045 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_001089_120 0.0695821285 - - PREDICTED: pectinesterase [Jatropha curcas]
10 Hb_029584_020 0.0703077219 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000282_110 0.0749824655 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
12 Hb_003093_050 0.0753357018 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
13 Hb_081344_010 0.0756283271 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000243_190 0.076511414 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
15 Hb_000433_040 0.076743463 - - -
16 Hb_004818_010 0.0769272961 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
17 Hb_000940_060 0.0774665133 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
18 Hb_006133_010 0.078300502 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_013818_020 0.0801379381 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
20 Hb_010666_020 0.0826082038 - - hypothetical protein JCGZ_04276 [Jatropha curcas]

Gene co-expression network

sample Hb_101097_010 Hb_101097_010 Hb_004807_040 Hb_004807_040 Hb_101097_010--Hb_004807_040 Hb_013405_240 Hb_013405_240 Hb_101097_010--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_101097_010--Hb_007416_250 Hb_000530_060 Hb_000530_060 Hb_101097_010--Hb_000530_060 Hb_000029_150 Hb_000029_150 Hb_101097_010--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_101097_010--Hb_158597_010 Hb_001289_050 Hb_001289_050 Hb_004807_040--Hb_001289_050 Hb_005736_030 Hb_005736_030 Hb_004807_040--Hb_005736_030 Hb_006133_010 Hb_006133_010 Hb_004807_040--Hb_006133_010 Hb_001310_020 Hb_001310_020 Hb_004807_040--Hb_001310_020 Hb_004807_040--Hb_000029_150 Hb_013405_240--Hb_007416_250 Hb_013818_020 Hb_013818_020 Hb_013405_240--Hb_013818_020 Hb_000282_110 Hb_000282_110 Hb_013405_240--Hb_000282_110 Hb_000243_190 Hb_000243_190 Hb_013405_240--Hb_000243_190 Hb_013405_240--Hb_000029_150 Hb_016334_010 Hb_016334_010 Hb_013405_240--Hb_016334_010 Hb_007416_250--Hb_013818_020 Hb_007416_250--Hb_000282_110 Hb_007416_250--Hb_000243_190 Hb_007416_250--Hb_000029_150 Hb_000762_050 Hb_000762_050 Hb_007416_250--Hb_000762_050 Hb_029584_020 Hb_029584_020 Hb_000530_060--Hb_029584_020 Hb_001089_120 Hb_001089_120 Hb_000530_060--Hb_001089_120 Hb_003805_110 Hb_003805_110 Hb_000530_060--Hb_003805_110 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_003093_050 Hb_003093_050 Hb_000530_060--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000530_060--Hb_004818_010 Hb_000029_150--Hb_000243_190 Hb_000029_150--Hb_005736_030 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_000029_150--Hb_013818_020 Hb_000940_060 Hb_000940_060 Hb_158597_010--Hb_000940_060 Hb_000433_040 Hb_000433_040 Hb_158597_010--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_158597_010--Hb_081344_010 Hb_010666_020 Hb_010666_020 Hb_158597_010--Hb_010666_020 Hb_000152_300 Hb_000152_300 Hb_158597_010--Hb_000152_300 Hb_158597_010--Hb_004818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.227591 0.169546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00930826 1.27152

CAGE analysis