Hb_003093_050

Information

Type -
Description -
Location Contig3093: 74085-76963
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09750g
description hypothetical protein
nr
ID XP_012080860.1
description PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003093_050 0.0 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
2 Hb_004818_010 0.0317428351 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
3 Hb_029584_020 0.0476024308 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000629_110 0.048247846 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
5 Hb_004143_080 0.0489237467 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
6 Hb_000530_060 0.0495543543 - - -
7 Hb_000704_020 0.051778315 - - conserved hypothetical protein [Ricinus communis]
8 Hb_081344_010 0.0552834218 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_000433_040 0.0570032779 - - -
10 Hb_158597_010 0.0582621663 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_000815_120 0.0586099576 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_003805_110 0.0610583466 - - PREDICTED: laccase-11-like [Jatropha curcas]
13 Hb_000152_300 0.0620041584 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
14 Hb_001951_050 0.0621162561 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_001089_120 0.0633627747 - - PREDICTED: pectinesterase [Jatropha curcas]
16 Hb_010666_020 0.0640292971 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
17 Hb_000608_160 0.0659768031 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_001097_110 0.0674559912 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_001140_110 0.0693841082 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
20 Hb_005736_030 0.0735446113 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_003093_050 Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_003093_050--Hb_004818_010 Hb_029584_020 Hb_029584_020 Hb_003093_050--Hb_029584_020 Hb_000629_110 Hb_000629_110 Hb_003093_050--Hb_000629_110 Hb_004143_080 Hb_004143_080 Hb_003093_050--Hb_004143_080 Hb_000530_060 Hb_000530_060 Hb_003093_050--Hb_000530_060 Hb_000704_020 Hb_000704_020 Hb_003093_050--Hb_000704_020 Hb_004818_010--Hb_000704_020 Hb_004818_010--Hb_004143_080 Hb_004818_010--Hb_029584_020 Hb_004818_010--Hb_000530_060 Hb_000815_120 Hb_000815_120 Hb_004818_010--Hb_000815_120 Hb_029584_020--Hb_000530_060 Hb_003805_110 Hb_003805_110 Hb_029584_020--Hb_003805_110 Hb_081344_010 Hb_081344_010 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_000629_110--Hb_004818_010 Hb_000629_110--Hb_004143_080 Hb_000629_110--Hb_000704_020 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_005736_030 Hb_005736_030 Hb_000629_110--Hb_005736_030 Hb_004143_080--Hb_000815_120 Hb_002301_070 Hb_002301_070 Hb_004143_080--Hb_002301_070 Hb_004143_080--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_004143_080--Hb_001951_050 Hb_001089_120 Hb_001089_120 Hb_000530_060--Hb_001089_120 Hb_000530_060--Hb_003805_110 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_000704_020--Hb_000815_120 Hb_158597_010 Hb_158597_010 Hb_000704_020--Hb_158597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0365257 0.135867 5.42239 5.30463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 32.4284

CAGE analysis