Hb_001089_120

Information

Type -
Description -
Location Contig1089: 90688-94265
Sequence    

Annotation

kegg
ID rcu:RCOM_0708510
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012077095.1
description PREDICTED: pectinesterase [Jatropha curcas]
swissprot
ID Q3E989
description Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1
trembl
ID B9RR27
description Pectinesterase OS=Ricinus communis GN=RCOM_0708510 PE=3 SV=1
Gene Ontology
ID GO:0005618
description plant invertase pectin methylesterase inhibitor superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02707: 90860-93957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_120 0.0 - - PREDICTED: pectinesterase [Jatropha curcas]
2 Hb_000504_220 0.0266244668 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
3 Hb_000530_060 0.0290227509 - - -
4 Hb_029584_020 0.0507749119 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000608_160 0.0556829559 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
6 Hb_003251_010 0.0592379157 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
7 Hb_003805_110 0.0596603277 - - PREDICTED: laccase-11-like [Jatropha curcas]
8 Hb_004818_010 0.0633130515 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
9 Hb_003093_050 0.0633627747 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
10 Hb_043327_010 0.0653704113 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
11 Hb_003208_010 0.0684004071 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_101097_010 0.0695821285 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_001140_110 0.0737074938 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
14 Hb_000282_110 0.0741108897 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
15 Hb_007416_250 0.0751073679 - - -
16 Hb_005171_020 0.0751532926 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
17 Hb_013405_240 0.0754457666 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
18 Hb_000629_110 0.0777370877 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
19 Hb_081344_010 0.0778315078 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_000433_040 0.0807925701 - - -

Gene co-expression network

sample Hb_001089_120 Hb_001089_120 Hb_000504_220 Hb_000504_220 Hb_001089_120--Hb_000504_220 Hb_000530_060 Hb_000530_060 Hb_001089_120--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_001089_120--Hb_029584_020 Hb_000608_160 Hb_000608_160 Hb_001089_120--Hb_000608_160 Hb_003251_010 Hb_003251_010 Hb_001089_120--Hb_003251_010 Hb_003805_110 Hb_003805_110 Hb_001089_120--Hb_003805_110 Hb_000504_220--Hb_000530_060 Hb_043327_010 Hb_043327_010 Hb_000504_220--Hb_043327_010 Hb_000504_220--Hb_003805_110 Hb_000504_220--Hb_029584_020 Hb_005171_020 Hb_005171_020 Hb_000504_220--Hb_005171_020 Hb_000530_060--Hb_029584_020 Hb_000530_060--Hb_003805_110 Hb_003093_050 Hb_003093_050 Hb_000530_060--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000530_060--Hb_004818_010 Hb_029584_020--Hb_003805_110 Hb_081344_010 Hb_081344_010 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_000608_160--Hb_000504_220 Hb_000608_160--Hb_000530_060 Hb_000629_110 Hb_000629_110 Hb_000608_160--Hb_000629_110 Hb_000608_160--Hb_003093_050 Hb_000608_160--Hb_004818_010 Hb_003208_010 Hb_003208_010 Hb_003251_010--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_003251_010--Hb_000977_260 Hb_000893_040 Hb_000893_040 Hb_003251_010--Hb_000893_040 Hb_000282_110 Hb_000282_110 Hb_003251_010--Hb_000282_110 Hb_008489_030 Hb_008489_030 Hb_003251_010--Hb_008489_030 Hb_000398_110 Hb_000398_110 Hb_003251_010--Hb_000398_110 Hb_003058_150 Hb_003058_150 Hb_003805_110--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_003805_110--Hb_001140_110 Hb_001097_110 Hb_001097_110 Hb_003805_110--Hb_001097_110 Hb_003805_110--Hb_081344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00781008 58.5964 58.2246 0 0.0452973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 455.619

CAGE analysis