Hb_000608_160

Information

Type transcription factor
Description TF Family: GNAT
Location Contig608: 70342-70905
Sequence    

Annotation

kegg
ID rcu:RCOM_1465100
description N-acetyltransferase, putative
nr
ID XP_002514546.1
description N-acetyltransferase, putative [Ricinus communis]
swissprot
ID Q1XDU5
description Uncharacterized N-acetyltransferase ycf52 OS=Pyropia yezoensis GN=ycf52 PE=3 SV=1
trembl
ID B9RLC7
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_1465100 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized n-acetyltransferase ycf52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_160 0.0 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
2 Hb_001089_120 0.0556829559 - - PREDICTED: pectinesterase [Jatropha curcas]
3 Hb_000504_220 0.0600488414 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
4 Hb_000530_060 0.0638632778 - - -
5 Hb_000629_110 0.0653057059 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
6 Hb_003093_050 0.0659768031 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
7 Hb_004818_010 0.0660472353 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
8 Hb_001080_290 0.0687867618 - - PSI reaction center subunit II [Citrus sinensis]
9 Hb_001951_050 0.0721705503 - - chlorophyll A/B binding protein, putative [Ricinus communis]
10 Hb_001140_110 0.0762566254 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
11 Hb_029584_020 0.0771516117 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005736_030 0.0805323176 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
13 Hb_003251_010 0.0806528612 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
14 Hb_043327_010 0.0823043357 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
15 Hb_003805_110 0.0824256006 - - PREDICTED: laccase-11-like [Jatropha curcas]
16 Hb_020805_090 0.0852447313 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
17 Hb_001775_010 0.0859666521 - - conserved hypothetical protein [Ricinus communis]
18 Hb_183479_030 0.0881200458 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
19 Hb_003208_010 0.0883824149 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_004855_030 0.0889242106 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_160 Hb_000608_160 Hb_001089_120 Hb_001089_120 Hb_000608_160--Hb_001089_120 Hb_000504_220 Hb_000504_220 Hb_000608_160--Hb_000504_220 Hb_000530_060 Hb_000530_060 Hb_000608_160--Hb_000530_060 Hb_000629_110 Hb_000629_110 Hb_000608_160--Hb_000629_110 Hb_003093_050 Hb_003093_050 Hb_000608_160--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000608_160--Hb_004818_010 Hb_001089_120--Hb_000504_220 Hb_001089_120--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_001089_120--Hb_029584_020 Hb_003251_010 Hb_003251_010 Hb_001089_120--Hb_003251_010 Hb_003805_110 Hb_003805_110 Hb_001089_120--Hb_003805_110 Hb_000504_220--Hb_000530_060 Hb_043327_010 Hb_043327_010 Hb_000504_220--Hb_043327_010 Hb_000504_220--Hb_003805_110 Hb_000504_220--Hb_029584_020 Hb_005171_020 Hb_005171_020 Hb_000504_220--Hb_005171_020 Hb_000530_060--Hb_029584_020 Hb_000530_060--Hb_003805_110 Hb_000530_060--Hb_003093_050 Hb_000530_060--Hb_004818_010 Hb_000629_110--Hb_003093_050 Hb_000629_110--Hb_004818_010 Hb_004143_080 Hb_004143_080 Hb_000629_110--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_000629_110--Hb_000704_020 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_005736_030 Hb_005736_030 Hb_000629_110--Hb_005736_030 Hb_003093_050--Hb_004818_010 Hb_003093_050--Hb_029584_020 Hb_003093_050--Hb_004143_080 Hb_003093_050--Hb_000704_020 Hb_004818_010--Hb_000704_020 Hb_004818_010--Hb_004143_080 Hb_004818_010--Hb_029584_020 Hb_000815_120 Hb_000815_120 Hb_004818_010--Hb_000815_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0894602 2.8228 2.86515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0871225 0 0 22.6907

CAGE analysis