Hb_005678_030

Information

Type -
Description -
Location Contig5678: 55997-61141
Sequence    

Annotation

kegg
ID rcu:RCOM_0812190
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012067737.1
description PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
swissprot
ID Q9SN46
description Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2
trembl
ID A0A067LQA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22116 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005678_030 0.0 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
2 Hb_000135_080 0.0723697326 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
3 Hb_077151_010 0.0728843298 - - ankyrin repeat protein [Bruguiera gymnorhiza]
4 Hb_000476_030 0.0835090239 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
5 Hb_168319_040 0.1042044013 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
6 Hb_006455_020 0.1103254808 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
7 Hb_000441_080 0.1122602248 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000858_050 0.1168864663 - - kinase, putative [Ricinus communis]
9 Hb_001856_290 0.1172387614 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
10 Hb_000522_030 0.1196023177 - - hypothetical protein VITISV_006017 [Vitis vinifera]
11 Hb_002111_010 0.122069017 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_001001_130 0.1239546038 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
13 Hb_012528_040 0.1241980782 - - -
14 Hb_003073_030 0.1247692575 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007533_050 0.1251119668 - - -
16 Hb_015807_020 0.1265296711 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_093388_010 0.1279238077 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_007101_090 0.131674502 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
19 Hb_020831_070 0.1320700959 - - hypothetical protein VITISV_027174 [Vitis vinifera]
20 Hb_032016_010 0.132937371 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_005678_030 Hb_005678_030 Hb_000135_080 Hb_000135_080 Hb_005678_030--Hb_000135_080 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_000476_030 Hb_000476_030 Hb_005678_030--Hb_000476_030 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_006455_020 Hb_006455_020 Hb_005678_030--Hb_006455_020 Hb_000441_080 Hb_000441_080 Hb_005678_030--Hb_000441_080 Hb_000135_080--Hb_000476_030 Hb_001001_130 Hb_001001_130 Hb_000135_080--Hb_001001_130 Hb_001856_290 Hb_001856_290 Hb_000135_080--Hb_001856_290 Hb_012528_040 Hb_012528_040 Hb_000135_080--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_000135_080--Hb_000858_050 Hb_002111_010 Hb_002111_010 Hb_077151_010--Hb_002111_010 Hb_077151_010--Hb_000441_080 Hb_003073_030 Hb_003073_030 Hb_077151_010--Hb_003073_030 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_077151_010--Hb_001579_050 Hb_000522_030 Hb_000522_030 Hb_000476_030--Hb_000522_030 Hb_000476_030--Hb_006455_020 Hb_005029_030 Hb_005029_030 Hb_000476_030--Hb_005029_030 Hb_000476_030--Hb_000858_050 Hb_168319_040--Hb_000441_080 Hb_168319_040--Hb_077151_010 Hb_168319_040--Hb_001579_050 Hb_001691_170 Hb_001691_170 Hb_168319_040--Hb_001691_170 Hb_168319_040--Hb_000858_050 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000644_020 Hb_000644_020 Hb_006455_020--Hb_000644_020 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_000441_080--Hb_002111_010 Hb_000139_030 Hb_000139_030 Hb_000441_080--Hb_000139_030 Hb_000011_440 Hb_000011_440 Hb_000441_080--Hb_000011_440 Hb_000081_110 Hb_000081_110 Hb_000441_080--Hb_000081_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.969971 2.34366 1.18951 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0159133 0 0 1.98773 20.4048

CAGE analysis