Hb_000441_080

Information

Type -
Description -
Location Contig441: 102503-104198
Sequence    

Annotation

kegg
ID rcu:RCOM_0851860
description calmodulin binding protein, putative
nr
ID XP_002517378.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUD3
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42625: 103760-104416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_080 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_002111_010 0.0425816304 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_077151_010 0.0772780454 - - ankyrin repeat protein [Bruguiera gymnorhiza]
4 Hb_168319_040 0.091582701 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
5 Hb_000139_030 0.0917977935 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
6 Hb_000011_440 0.0942128993 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
7 Hb_000081_110 0.1011913604 - - nitrate transporter, putative [Ricinus communis]
8 Hb_001579_050 0.1100380835 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_005678_030 0.1122602248 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_048755_030 0.1131724577 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_057880_020 0.1210215528 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
12 Hb_000483_440 0.1235160297 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000462_160 0.1239033986 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003073_030 0.1287377654 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004146_030 0.1289565951 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_023738_010 0.1291510648 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
17 Hb_001300_160 0.1298203504 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
18 Hb_002943_020 0.1351369952 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
19 Hb_163950_040 0.136025214 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
20 Hb_004291_050 0.1361393525 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]

Gene co-expression network

sample Hb_000441_080 Hb_000441_080 Hb_002111_010 Hb_002111_010 Hb_000441_080--Hb_002111_010 Hb_077151_010 Hb_077151_010 Hb_000441_080--Hb_077151_010 Hb_168319_040 Hb_168319_040 Hb_000441_080--Hb_168319_040 Hb_000139_030 Hb_000139_030 Hb_000441_080--Hb_000139_030 Hb_000011_440 Hb_000011_440 Hb_000441_080--Hb_000011_440 Hb_000081_110 Hb_000081_110 Hb_000441_080--Hb_000081_110 Hb_002111_010--Hb_077151_010 Hb_002111_010--Hb_000011_440 Hb_048755_030 Hb_048755_030 Hb_002111_010--Hb_048755_030 Hb_001579_050 Hb_001579_050 Hb_002111_010--Hb_001579_050 Hb_002111_010--Hb_000139_030 Hb_005678_030 Hb_005678_030 Hb_077151_010--Hb_005678_030 Hb_003073_030 Hb_003073_030 Hb_077151_010--Hb_003073_030 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_077151_010--Hb_001579_050 Hb_168319_040--Hb_077151_010 Hb_168319_040--Hb_001579_050 Hb_001691_170 Hb_001691_170 Hb_168319_040--Hb_001691_170 Hb_000858_050 Hb_000858_050 Hb_168319_040--Hb_000858_050 Hb_168319_040--Hb_005678_030 Hb_000139_030--Hb_001579_050 Hb_000139_030--Hb_000081_110 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_000139_030--Hb_048755_030 Hb_000092_060 Hb_000092_060 Hb_000011_440--Hb_000092_060 Hb_004291_050 Hb_004291_050 Hb_000011_440--Hb_004291_050 Hb_001300_160 Hb_001300_160 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000081_110--Hb_001579_050 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.225784 0.41493 0.272269 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.205557 2.23626

CAGE analysis