Hb_012528_040

Information

Type -
Description -
Location Contig12528: 42742-44069
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07778: 43447-43992
cDNA
(Sanger)
(ID:Location)		 048_O16.ab1: 43449-43992

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012528_040 0.0 - - -
2 Hb_161881_010 0.066277329 - - laccase, putative [Ricinus communis]
3 Hb_000123_070 0.083926425 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_001001_130 0.0947527256 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
5 Hb_002010_010 0.0990008632 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_000135_080 0.1040353873 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_014109_020 0.1083587621 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
8 Hb_007101_090 0.1150440922 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
9 Hb_000922_110 0.1190139373 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
10 Hb_005678_030 0.1241980782 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_101462_010 0.1247883413 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
12 Hb_032733_030 0.1314070633 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
13 Hb_000336_130 0.1334161704 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
14 Hb_027638_010 0.1339348605 - - Protein KES1, putative [Ricinus communis]
15 Hb_000476_030 0.1354304026 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
16 Hb_004375_020 0.136206911 - - hypothetical protein VITISV_034560 [Vitis vinifera]
17 Hb_171685_070 0.1374732535 - - -
18 Hb_003053_100 0.1382688257 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_168319_040 0.1389982679 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
20 Hb_000858_050 0.1393932055 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012528_040 Hb_012528_040 Hb_161881_010 Hb_161881_010 Hb_012528_040--Hb_161881_010 Hb_000123_070 Hb_000123_070 Hb_012528_040--Hb_000123_070 Hb_001001_130 Hb_001001_130 Hb_012528_040--Hb_001001_130 Hb_002010_010 Hb_002010_010 Hb_012528_040--Hb_002010_010 Hb_000135_080 Hb_000135_080 Hb_012528_040--Hb_000135_080 Hb_014109_020 Hb_014109_020 Hb_012528_040--Hb_014109_020 Hb_161881_010--Hb_002010_010 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_101462_010 Hb_101462_010 Hb_000123_070--Hb_101462_010 Hb_007595_030 Hb_007595_030 Hb_000123_070--Hb_007595_030 Hb_000373_140 Hb_000373_140 Hb_000123_070--Hb_000373_140 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050 Hb_007101_090 Hb_007101_090 Hb_001001_130--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_001001_130--Hb_052139_010 Hb_001856_290 Hb_001856_290 Hb_001001_130--Hb_001856_290 Hb_001001_130--Hb_000135_080 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050 Hb_002010_010--Hb_003732_030 Hb_002010_010--Hb_007101_090 Hb_000336_130 Hb_000336_130 Hb_002010_010--Hb_000336_130 Hb_001999_330 Hb_001999_330 Hb_002010_010--Hb_001999_330 Hb_002010_010--Hb_004030_010 Hb_000476_030 Hb_000476_030 Hb_000135_080--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_000135_080--Hb_005678_030 Hb_000135_080--Hb_001856_290 Hb_000135_080--Hb_000858_050 Hb_000522_030 Hb_000522_030 Hb_014109_020--Hb_000522_030 Hb_005623_060 Hb_005623_060 Hb_014109_020--Hb_005623_060 Hb_004375_020 Hb_004375_020 Hb_014109_020--Hb_004375_020 Hb_002630_030 Hb_002630_030 Hb_014109_020--Hb_002630_030 Hb_011931_090 Hb_011931_090 Hb_014109_020--Hb_011931_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.3112 0.772718 0.209329 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.268495 9.04684

CAGE analysis