Hb_004030_010

Information

Type -
Description -
Location Contig4030: 5503-8101
Sequence    

Annotation

kegg
ID cic:CICLE_v10013050mg
description hypothetical protein
nr
ID XP_006429211.1
description hypothetical protein CICLE_v10013050mg [Citrus clementina]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID V4SYZ8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013050mg PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain flagellar outer arm-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39961: 7168-7454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004030_010 0.0 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
2 Hb_003732_030 0.0713343895 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_000776_120 0.0775648348 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
4 Hb_002010_010 0.0848888262 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_161881_010 0.0997755207 - - laccase, putative [Ricinus communis]
6 Hb_011689_070 0.1002349174 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
7 Hb_008864_050 0.1060302442 - - protein binding protein, putative [Ricinus communis]
8 Hb_000922_110 0.1076993643 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
9 Hb_001775_010 0.1139519848 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005194_050 0.1142655399 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_048694_010 0.1148346782 - - catalytic, putative [Ricinus communis]
12 Hb_000768_080 0.1193129479 - - Mlo protein [Hevea brasiliensis]
13 Hb_003947_020 0.1229214384 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
14 Hb_171685_070 0.126292691 - - -
15 Hb_000349_150 0.1272383439 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_009004_020 0.1276071476 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_006331_010 0.1276087797 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
18 Hb_063885_010 0.1280256377 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_159308_010 0.1293724535 - - ribosomal protein S4 [Cercidiphyllum japonicum]
20 Hb_000696_200 0.1296164041 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004030_010 Hb_004030_010 Hb_003732_030 Hb_003732_030 Hb_004030_010--Hb_003732_030 Hb_000776_120 Hb_000776_120 Hb_004030_010--Hb_000776_120 Hb_002010_010 Hb_002010_010 Hb_004030_010--Hb_002010_010 Hb_161881_010 Hb_161881_010 Hb_004030_010--Hb_161881_010 Hb_011689_070 Hb_011689_070 Hb_004030_010--Hb_011689_070 Hb_008864_050 Hb_008864_050 Hb_004030_010--Hb_008864_050 Hb_003732_030--Hb_002010_010 Hb_003732_030--Hb_011689_070 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_000922_110 Hb_000922_110 Hb_003732_030--Hb_000922_110 Hb_005194_050 Hb_005194_050 Hb_000776_120--Hb_005194_050 Hb_000776_120--Hb_008864_050 Hb_000776_120--Hb_002010_010 Hb_000768_080 Hb_000768_080 Hb_000776_120--Hb_000768_080 Hb_002010_010--Hb_161881_010 Hb_007101_090 Hb_007101_090 Hb_002010_010--Hb_007101_090 Hb_000336_130 Hb_000336_130 Hb_002010_010--Hb_000336_130 Hb_001999_330 Hb_001999_330 Hb_002010_010--Hb_001999_330 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_161881_010--Hb_000922_110 Hb_161881_010--Hb_003732_030 Hb_000349_150 Hb_000349_150 Hb_011689_070--Hb_000349_150 Hb_011689_070--Hb_000922_110 Hb_020805_090 Hb_020805_090 Hb_011689_070--Hb_020805_090 Hb_004855_030 Hb_004855_030 Hb_011689_070--Hb_004855_030 Hb_004150_020 Hb_004150_020 Hb_011689_070--Hb_004150_020 Hb_008864_050--Hb_001775_010 Hb_008864_050--Hb_000768_080 Hb_010021_040 Hb_010021_040 Hb_008864_050--Hb_010021_040 Hb_008864_050--Hb_003732_030 Hb_004920_080 Hb_004920_080 Hb_008864_050--Hb_004920_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.589147 1.05458 1.05961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103019 0 0 0 18.1353

CAGE analysis