Hb_011689_070

Information

Type -
Description -
Location Contig11689: 61594-69114
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000892mg
description hypothetical protein
nr
ID XP_012069460.1
description PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
swissprot
ID Q42910
description Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1
trembl
ID A0A067KV17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02059 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05235: 61657-61980 , PASA_asmbl_05236: 63551-66243 , PASA_asmbl_05238: 66551-68931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_070 0.0 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
2 Hb_000349_150 0.0494346684 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
3 Hb_000922_110 0.0503171232 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_020805_090 0.0602566474 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_004855_030 0.0709735356 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_003732_030 0.0717647307 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_004150_020 0.0759874781 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_000893_040 0.0845831834 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
9 Hb_003053_090 0.0859972219 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
10 Hb_008489_030 0.0862417116 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_020859_010 0.08802928 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
12 Hb_015981_010 0.0882392007 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000977_260 0.088337904 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
14 Hb_006040_090 0.0902774097 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
15 Hb_001210_110 0.0910667253 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
16 Hb_000832_050 0.0930457615 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
17 Hb_003251_010 0.0942816513 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
18 Hb_003208_010 0.0977749259 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000398_110 0.0984239768 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
20 Hb_002995_060 0.0984445119 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_011689_070 Hb_011689_070 Hb_000349_150 Hb_000349_150 Hb_011689_070--Hb_000349_150 Hb_000922_110 Hb_000922_110 Hb_011689_070--Hb_000922_110 Hb_020805_090 Hb_020805_090 Hb_011689_070--Hb_020805_090 Hb_004855_030 Hb_004855_030 Hb_011689_070--Hb_004855_030 Hb_003732_030 Hb_003732_030 Hb_011689_070--Hb_003732_030 Hb_004150_020 Hb_004150_020 Hb_011689_070--Hb_004150_020 Hb_000349_150--Hb_004855_030 Hb_000349_150--Hb_000922_110 Hb_000349_150--Hb_020805_090 Hb_000349_150--Hb_004150_020 Hb_000977_260 Hb_000977_260 Hb_000349_150--Hb_000977_260 Hb_000922_110--Hb_004150_020 Hb_006040_090 Hb_006040_090 Hb_000922_110--Hb_006040_090 Hb_000922_110--Hb_004855_030 Hb_001210_110 Hb_001210_110 Hb_000922_110--Hb_001210_110 Hb_020805_090--Hb_004855_030 Hb_003208_010 Hb_003208_010 Hb_020805_090--Hb_003208_010 Hb_020805_090--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_020805_090--Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040 Hb_002010_010 Hb_002010_010 Hb_003732_030--Hb_002010_010 Hb_004030_010 Hb_004030_010 Hb_003732_030--Hb_004030_010 Hb_000776_120 Hb_000776_120 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_003732_030--Hb_000922_110 Hb_003053_090 Hb_003053_090 Hb_004150_020--Hb_003053_090 Hb_020859_010 Hb_020859_010 Hb_004150_020--Hb_020859_010 Hb_015981_010 Hb_015981_010 Hb_004150_020--Hb_015981_010 Hb_004150_020--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_004150_020--Hb_008489_030 Hb_004150_020--Hb_000977_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.61899 5.43168 2.38127 0 0.0112235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0826194 0.05418 0 0.00859328 46.7657

CAGE analysis