Hb_004855_030

Information

Type -
Description -
Location Contig4855: 20700-23975
Sequence    

Annotation

kegg
ID tcc:TCM_021719
description Leucine-rich repeat protein kinase family protein, putative
nr
ID XP_012087887.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067JWT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25034 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44975: 20956-21508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004855_030 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_000349_150 0.0354211509 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
3 Hb_020805_090 0.050503835 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_003251_010 0.0617027617 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
5 Hb_000977_260 0.0622695645 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
6 Hb_003208_010 0.0642226933 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
7 Hb_000893_040 0.0668875291 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
8 Hb_000832_050 0.0671157609 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
9 Hb_004150_020 0.0703843162 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_011689_070 0.0709735356 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
11 Hb_000083_010 0.0713609615 - - -
12 Hb_000922_110 0.0721836798 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
13 Hb_008489_030 0.0731509929 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_000398_110 0.0758679515 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
15 Hb_005736_030 0.0799637567 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
16 Hb_000282_110 0.0802514856 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
17 Hb_020859_010 0.0816374935 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
18 Hb_001951_040 0.0829780624 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
19 Hb_000270_040 0.083708109 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003947_020 0.0841766582 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]

Gene co-expression network

sample Hb_004855_030 Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_004855_030--Hb_000349_150 Hb_020805_090 Hb_020805_090 Hb_004855_030--Hb_020805_090 Hb_003251_010 Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_000977_260 Hb_000977_260 Hb_004855_030--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040 Hb_000922_110 Hb_000922_110 Hb_000349_150--Hb_000922_110 Hb_011689_070 Hb_011689_070 Hb_000349_150--Hb_011689_070 Hb_000349_150--Hb_020805_090 Hb_004150_020 Hb_004150_020 Hb_000349_150--Hb_004150_020 Hb_000349_150--Hb_000977_260 Hb_020805_090--Hb_003208_010 Hb_020805_090--Hb_000977_260 Hb_020805_090--Hb_011689_070 Hb_020805_090--Hb_003251_010 Hb_003251_010--Hb_003208_010 Hb_003251_010--Hb_000977_260 Hb_003251_010--Hb_000893_040 Hb_000282_110 Hb_000282_110 Hb_003251_010--Hb_000282_110 Hb_008489_030 Hb_008489_030 Hb_003251_010--Hb_008489_030 Hb_000398_110 Hb_000398_110 Hb_003251_010--Hb_000398_110 Hb_000977_260--Hb_003208_010 Hb_000977_260--Hb_000893_040 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_008489_030 Hb_020859_010 Hb_020859_010 Hb_000977_260--Hb_020859_010 Hb_003208_010--Hb_000282_110 Hb_003208_010--Hb_000398_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_000893_040--Hb_008489_030 Hb_015981_010 Hb_015981_010 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_020859_010 Hb_002997_060 Hb_002997_060 Hb_000893_040--Hb_002997_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00504209 0.139852 0.0733017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00433497 1.05038

CAGE analysis