Hb_150516_010

Information

Type -
Description -
Location Contig150516: 148-536
Sequence    

Annotation

kegg
ID bvg:104886268
description uncharacterized LOC104886268
nr
ID XP_010669034.1
description PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150516_010 0.0 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
2 Hb_005623_060 0.0795690171 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000522_030 0.0883762502 - - hypothetical protein VITISV_006017 [Vitis vinifera]
4 Hb_011931_090 0.0951838734 - - -
5 Hb_000405_010 0.1204086234 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
6 Hb_000346_050 0.1243752089 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_019654_170 0.1259076368 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
8 Hb_001355_050 0.1266087302 - - -
9 Hb_000512_050 0.1284044426 - - hypothetical protein VITISV_005640 [Vitis vinifera]
10 Hb_003169_040 0.1291703238 - - -
11 Hb_011892_010 0.1297729027 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001383_080 0.1372050883 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
13 Hb_043792_030 0.1405728271 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_003927_020 0.1494823233 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
15 Hb_180214_010 0.1511205525 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_005595_030 0.1527076007 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
17 Hb_001880_020 0.156871761 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
18 Hb_000432_020 0.1586610693 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
19 Hb_014109_020 0.1591058313 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
20 Hb_094002_010 0.1601143846 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_150516_010 Hb_150516_010 Hb_005623_060 Hb_005623_060 Hb_150516_010--Hb_005623_060 Hb_000522_030 Hb_000522_030 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_000512_050 Hb_000512_050 Hb_005623_060--Hb_000512_050 Hb_003169_040 Hb_003169_040 Hb_005623_060--Hb_003169_040 Hb_005623_060--Hb_000522_030 Hb_080033_020 Hb_080033_020 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_000522_030--Hb_011931_090 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_000135_080 Hb_000135_080 Hb_000522_030--Hb_000135_080 Hb_000522_030--Hb_000405_010 Hb_011931_090--Hb_000405_010 Hb_011931_090--Hb_005623_060 Hb_011931_090--Hb_014109_020 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030 Hb_054127_020 Hb_054127_020 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010 Hb_043792_030 Hb_043792_030 Hb_000346_050--Hb_043792_030 Hb_000346_050--Hb_019654_170 Hb_001856_280 Hb_001856_280 Hb_000346_050--Hb_001856_280 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_019654_170--Hb_043792_030 Hb_019654_170--Hb_001856_280 Hb_005920_030 Hb_005920_030 Hb_019654_170--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_019654_170--Hb_003311_020 Hb_020831_070 Hb_020831_070 Hb_019654_170--Hb_020831_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0780474 0.0699065 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.142423 0.862883

CAGE analysis