Hb_004312_020

Information

Type -
Description -
Location Contig4312: 24995-25938
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42269: 25609-26137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004312_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001345_040 0.105157412 - - hypothetical protein VITISV_015004 [Vitis vinifera]
3 Hb_008834_010 0.1158012652 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
4 Hb_001366_260 0.1173525016 - - T4.15 [Malus x robusta]
5 Hb_001468_040 0.119651473 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
6 Hb_035651_010 0.12265319 - - receptor-kinase, putative [Ricinus communis]
7 Hb_188075_010 0.1233365408 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
8 Hb_067472_010 0.1252394151 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
9 Hb_006787_070 0.1258588061 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
10 Hb_000820_100 0.1267376479 - - RNA-directed DNA polymerase [Arachis hypogaea]
11 Hb_116784_020 0.1282628503 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
12 Hb_005092_090 0.1282700725 - - cold regulated protein [Manihot esculenta]
13 Hb_006588_020 0.1292333414 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_017225_030 0.1339527538 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
15 Hb_003994_070 0.136789457 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_000352_060 0.1368906161 - - RNA-directed DNA polymerase [Arachis hypogaea]
17 Hb_012796_030 0.1379101046 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
18 Hb_000101_320 0.1410441122 - - -
19 Hb_004520_010 0.1433284536 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_001514_150 0.1436452863 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_004312_020 Hb_004312_020 Hb_001345_040 Hb_001345_040 Hb_004312_020--Hb_001345_040 Hb_008834_010 Hb_008834_010 Hb_004312_020--Hb_008834_010 Hb_001366_260 Hb_001366_260 Hb_004312_020--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_004312_020--Hb_001468_040 Hb_035651_010 Hb_035651_010 Hb_004312_020--Hb_035651_010 Hb_188075_010 Hb_188075_010 Hb_004312_020--Hb_188075_010 Hb_006588_020 Hb_006588_020 Hb_001345_040--Hb_006588_020 Hb_001345_040--Hb_188075_010 Hb_005092_090 Hb_005092_090 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_000101_320 Hb_000101_320 Hb_008834_010--Hb_000101_320 Hb_017225_030 Hb_017225_030 Hb_008834_010--Hb_017225_030 Hb_000685_140 Hb_000685_140 Hb_008834_010--Hb_000685_140 Hb_000260_730 Hb_000260_730 Hb_008834_010--Hb_000260_730 Hb_001452_090 Hb_001452_090 Hb_008834_010--Hb_001452_090 Hb_000820_100 Hb_000820_100 Hb_001366_260--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_001366_260--Hb_005092_090 Hb_001468_040--Hb_067472_010 Hb_001468_040--Hb_116784_020 Hb_000237_170 Hb_000237_170 Hb_001468_040--Hb_000237_170 Hb_001468_040--Hb_001366_260 Hb_002983_090 Hb_002983_090 Hb_001468_040--Hb_002983_090 Hb_004520_010 Hb_004520_010 Hb_035651_010--Hb_004520_010 Hb_020831_070 Hb_020831_070 Hb_035651_010--Hb_020831_070 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_005920_030 Hb_005920_030 Hb_035651_010--Hb_005920_030 Hb_027337_130 Hb_027337_130 Hb_188075_010--Hb_027337_130 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_008461_070 Hb_008461_070 Hb_188075_010--Hb_008461_070 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_000033_010 Hb_000033_010 Hb_188075_010--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.344044 0.190128 0.21175 0 0.0238826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.394675 1.4799

CAGE analysis