Hb_001652_130

Information

Type -
Description -
Location Contig1652: 161576-163947
Sequence    

Annotation

kegg
ID csv:101204792
description putative amidase C869.01-like
nr
ID KJB15755.1
description hypothetical protein B456_002G193900 [Gossypium raimondii]
swissprot
ID Q97EX8
description Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA2 PE=3 SV=1
trembl
ID A0A0D2R976
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G193900 PE=4 SV=1
Gene Ontology
ID GO:0016787
description amidase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_130 0.0 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
2 Hb_185474_020 0.0832659883 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_188075_010 0.0852635012 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
4 Hb_000033_010 0.0895789056 - - Protein MLO, putative [Ricinus communis]
5 Hb_006198_040 0.0972558383 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003142_080 0.1026894759 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_002943_020 0.1071688501 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
8 Hb_002615_080 0.1089598334 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
9 Hb_027337_130 0.1096626654 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
10 Hb_004724_260 0.113063147 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
11 Hb_010311_020 0.1178698628 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_000416_010 0.118812884 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
13 Hb_001345_040 0.1193784646 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_000705_040 0.1217600649 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006588_020 0.1252157221 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_007035_010 0.1263088361 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
17 Hb_002636_070 0.1280394188 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_124579_020 0.1283693009 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
19 Hb_001300_160 0.1295331551 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
20 Hb_029223_010 0.1300378436 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_130 Hb_001652_130 Hb_185474_020 Hb_185474_020 Hb_001652_130--Hb_185474_020 Hb_188075_010 Hb_188075_010 Hb_001652_130--Hb_188075_010 Hb_000033_010 Hb_000033_010 Hb_001652_130--Hb_000033_010 Hb_006198_040 Hb_006198_040 Hb_001652_130--Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_001652_130--Hb_003142_080 Hb_002943_020 Hb_002943_020 Hb_001652_130--Hb_002943_020 Hb_010311_020 Hb_010311_020 Hb_185474_020--Hb_010311_020 Hb_185474_020--Hb_003142_080 Hb_185474_020--Hb_006198_040 Hb_000380_140 Hb_000380_140 Hb_185474_020--Hb_000380_140 Hb_124579_020 Hb_124579_020 Hb_185474_020--Hb_124579_020 Hb_027337_130 Hb_027337_130 Hb_188075_010--Hb_027337_130 Hb_008461_070 Hb_008461_070 Hb_188075_010--Hb_008461_070 Hb_001345_040 Hb_001345_040 Hb_188075_010--Hb_001345_040 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_188075_010--Hb_000033_010 Hb_000033_010--Hb_006198_040 Hb_000033_010--Hb_003142_080 Hb_002636_070 Hb_002636_070 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_029223_010 Hb_029223_010 Hb_000033_010--Hb_029223_010 Hb_006198_040--Hb_003142_080 Hb_000130_480 Hb_000130_480 Hb_006198_040--Hb_000130_480 Hb_006198_040--Hb_124579_020 Hb_000836_030 Hb_000836_030 Hb_006198_040--Hb_000836_030 Hb_003142_080--Hb_124579_020 Hb_002635_010 Hb_002635_010 Hb_003142_080--Hb_002635_010 Hb_003142_080--Hb_029223_010 Hb_000705_040 Hb_000705_040 Hb_002943_020--Hb_000705_040 Hb_000675_010 Hb_000675_010 Hb_002943_020--Hb_000675_010 Hb_000270_640 Hb_000270_640 Hb_002943_020--Hb_000270_640 Hb_004979_070 Hb_004979_070 Hb_002943_020--Hb_004979_070 Hb_002073_150 Hb_002073_150 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16099 1.96045 1.59352 0 0.0115942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.044573 1.54109 6.30399

CAGE analysis