Hb_002983_090

Information

Type -
Description -
Location Contig2983: 94096-94528
Sequence    

Annotation

kegg
ID mdm:103417687
description uncharacterized LOC103417687
nr
ID KHN11161.1
description Altered inheritance of mitochondria protein 32 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2PP24
description Altered inheritance of mitochondria protein 32 OS=Glycine soja GN=glysoja_039424 PE=4 SV=1
Gene Ontology
ID GO:0016772
description dna ligase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_090 0.0 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
2 Hb_000237_160 0.1161110678 - - BEL1-like homeodomain protein 1 [Morus notabilis]
3 Hb_001468_040 0.124329689 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
4 Hb_008461_070 0.1257798895 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
5 Hb_158534_010 0.1285825765 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_046117_030 0.1313837722 - - sialyltransferase, putative [Ricinus communis]
7 Hb_000033_010 0.1316482339 - - Protein MLO, putative [Ricinus communis]
8 Hb_067472_010 0.1346299048 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
9 Hb_188075_010 0.1384198565 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
10 Hb_000594_130 0.1423674709 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_094437_020 0.1424328329 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_003142_080 0.1435056122 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_000027_230 0.1452815233 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_000237_170 0.1487921304 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
15 Hb_004312_020 0.1489553405 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001514_150 0.1530542016 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_001345_040 0.1554488616 - - hypothetical protein VITISV_015004 [Vitis vinifera]
18 Hb_003858_060 0.1586956135 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
19 Hb_001629_050 0.1587434732 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_003799_060 0.1598865753 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]

Gene co-expression network

sample Hb_002983_090 Hb_002983_090 Hb_000237_160 Hb_000237_160 Hb_002983_090--Hb_000237_160 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_067472_010 Hb_067472_010 Hb_001468_040--Hb_067472_010 Hb_116784_020 Hb_116784_020 Hb_001468_040--Hb_116784_020 Hb_001468_040--Hb_000237_170 Hb_001366_260 Hb_001366_260 Hb_001468_040--Hb_001366_260 Hb_004312_020 Hb_004312_020 Hb_001468_040--Hb_004312_020 Hb_125961_010 Hb_125961_010 Hb_008461_070--Hb_125961_010 Hb_188075_010 Hb_188075_010 Hb_008461_070--Hb_188075_010 Hb_162676_010 Hb_162676_010 Hb_008461_070--Hb_162676_010 Hb_027337_130 Hb_027337_130 Hb_008461_070--Hb_027337_130 Hb_003226_230 Hb_003226_230 Hb_008461_070--Hb_003226_230 Hb_002636_070 Hb_002636_070 Hb_008461_070--Hb_002636_070 Hb_038833_010 Hb_038833_010 Hb_158534_010--Hb_038833_010 Hb_028872_100 Hb_028872_100 Hb_158534_010--Hb_028872_100 Hb_094437_020 Hb_094437_020 Hb_158534_010--Hb_094437_020 Hb_092029_010 Hb_092029_010 Hb_158534_010--Hb_092029_010 Hb_158534_010--Hb_067472_010 Hb_046117_030--Hb_000033_010 Hb_000130_480 Hb_000130_480 Hb_046117_030--Hb_000130_480 Hb_046117_030--Hb_000237_160 Hb_046117_030--Hb_094437_020 Hb_000594_130 Hb_000594_130 Hb_046117_030--Hb_000594_130 Hb_006198_040 Hb_006198_040 Hb_000033_010--Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_000033_010--Hb_003142_080 Hb_001652_130 Hb_001652_130 Hb_000033_010--Hb_001652_130 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_029223_010 Hb_029223_010 Hb_000033_010--Hb_029223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.4456 6.34178 14.8755 0.819778 0.67286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.224812 0.337435 12.5445 41.6291

CAGE analysis