Hb_158534_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig158534: 15-2577
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14040: 1282-1756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158534_010 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_002983_090 0.1285825765 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
3 Hb_038833_010 0.1458086568 - - polyprotein [Ananas comosus]
4 Hb_028872_100 0.1533669145 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
5 Hb_094437_020 0.1548822964 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_092029_010 0.1579196356 - - Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_067472_010 0.1667441275 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
8 Hb_000237_160 0.1703059295 - - BEL1-like homeodomain protein 1 [Morus notabilis]
9 Hb_000685_140 0.172306586 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
10 Hb_041813_040 0.1725600032 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
11 Hb_005306_020 0.1754196195 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_049293_010 0.1756387072 - - kinase, putative [Ricinus communis]
13 Hb_017225_030 0.175726121 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
14 Hb_006355_070 0.176671533 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
15 Hb_002876_280 0.1770218093 - - hypothetical protein RCOM_0686540 [Ricinus communis]
16 Hb_002308_060 0.1775451563 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
17 Hb_000027_230 0.1778585823 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_003799_060 0.1820328315 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
19 Hb_010863_070 0.1822792101 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
20 Hb_008834_010 0.1825021325 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]

Gene co-expression network

sample Hb_158534_010 Hb_158534_010 Hb_002983_090 Hb_002983_090 Hb_158534_010--Hb_002983_090 Hb_038833_010 Hb_038833_010 Hb_158534_010--Hb_038833_010 Hb_028872_100 Hb_028872_100 Hb_158534_010--Hb_028872_100 Hb_094437_020 Hb_094437_020 Hb_158534_010--Hb_094437_020 Hb_092029_010 Hb_092029_010 Hb_158534_010--Hb_092029_010 Hb_067472_010 Hb_067472_010 Hb_158534_010--Hb_067472_010 Hb_000237_160 Hb_000237_160 Hb_002983_090--Hb_000237_160 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010 Hb_006355_070 Hb_006355_070 Hb_038833_010--Hb_006355_070 Hb_170878_060 Hb_170878_060 Hb_038833_010--Hb_170878_060 Hb_002308_060 Hb_002308_060 Hb_038833_010--Hb_002308_060 Hb_038833_010--Hb_028872_100 Hb_001277_380 Hb_001277_380 Hb_038833_010--Hb_001277_380 Hb_000685_140 Hb_000685_140 Hb_028872_100--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_028872_100--Hb_001411_100 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_028872_100--Hb_000417_150 Hb_000101_320 Hb_000101_320 Hb_028872_100--Hb_000101_320 Hb_005306_020 Hb_005306_020 Hb_028872_100--Hb_005306_020 Hb_003858_060 Hb_003858_060 Hb_094437_020--Hb_003858_060 Hb_000207_240 Hb_000207_240 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000856_210 Hb_000856_210 Hb_094437_020--Hb_000856_210 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_004204_220 Hb_004204_220 Hb_094437_020--Hb_004204_220 Hb_005305_030 Hb_005305_030 Hb_092029_010--Hb_005305_030 Hb_092029_010--Hb_002308_060 Hb_000264_340 Hb_000264_340 Hb_092029_010--Hb_000264_340 Hb_092029_010--Hb_038833_010 Hb_000465_450 Hb_000465_450 Hb_092029_010--Hb_000465_450 Hb_092029_010--Hb_005306_020 Hb_116784_020 Hb_116784_020 Hb_067472_010--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_067472_010--Hb_001366_260 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_000820_100 Hb_000820_100 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0534416 2.15896 0.311593 1.94844 0.191109 0.0224723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0194505 0 0.0582416 2.11037 5.90845

CAGE analysis