Hb_006787_070

Information

Type -
Description -
Location Contig6787: 64794-65438
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_009632062.1
description PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID Q6L4A6
description Putative reverse transcriptase, identical OS=Solanum demissum GN=SDM1_19t00011 PE=4 SV=1
Gene Ontology
ID GO:0003677
description reverse identical

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006787_070 0.0 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
2 Hb_001345_040 0.1125120447 - - hypothetical protein VITISV_015004 [Vitis vinifera]
3 Hb_188075_010 0.1134330065 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
4 Hb_012796_030 0.1155884979 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_005092_090 0.1168972087 - - cold regulated protein [Manihot esculenta]
6 Hb_002798_080 0.1174573877 - - hypothetical protein VITISV_043745 [Vitis vinifera]
7 Hb_004312_020 0.1258588061 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000352_060 0.1272118449 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_000574_340 0.1294635506 - - hypothetical protein RCOM_0901420 [Ricinus communis]
10 Hb_116784_020 0.1311687927 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
11 Hb_006588_020 0.131990512 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_027337_130 0.1355373511 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
13 Hb_001514_150 0.1377808333 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
14 Hb_001468_040 0.1378184445 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
15 Hb_003440_080 0.1400818236 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_067472_010 0.1503498049 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
17 Hb_041813_040 0.1531974255 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
18 Hb_000027_230 0.1535139521 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_008461_070 0.1539390803 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
20 Hb_001366_260 0.1559574486 - - T4.15 [Malus x robusta]

Gene co-expression network

sample Hb_006787_070 Hb_006787_070 Hb_001345_040 Hb_001345_040 Hb_006787_070--Hb_001345_040 Hb_188075_010 Hb_188075_010 Hb_006787_070--Hb_188075_010 Hb_012796_030 Hb_012796_030 Hb_006787_070--Hb_012796_030 Hb_005092_090 Hb_005092_090 Hb_006787_070--Hb_005092_090 Hb_002798_080 Hb_002798_080 Hb_006787_070--Hb_002798_080 Hb_004312_020 Hb_004312_020 Hb_006787_070--Hb_004312_020 Hb_006588_020 Hb_006588_020 Hb_001345_040--Hb_006588_020 Hb_001345_040--Hb_188075_010 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_001345_040--Hb_004312_020 Hb_027337_130 Hb_027337_130 Hb_188075_010--Hb_027337_130 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_008461_070 Hb_008461_070 Hb_188075_010--Hb_008461_070 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_000033_010 Hb_000033_010 Hb_188075_010--Hb_000033_010 Hb_003440_080 Hb_003440_080 Hb_012796_030--Hb_003440_080 Hb_000289_090 Hb_000289_090 Hb_012796_030--Hb_000289_090 Hb_012796_030--Hb_000574_340 Hb_012796_030--Hb_005092_090 Hb_004994_200 Hb_004994_200 Hb_012796_030--Hb_004994_200 Hb_005092_090--Hb_006588_020 Hb_005092_090--Hb_000574_340 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_001497_040 Hb_001497_040 Hb_002798_080--Hb_001497_040 Hb_002798_080--Hb_001345_040 Hb_002798_080--Hb_006588_020 Hb_002798_080--Hb_188075_010 Hb_002798_080--Hb_004312_020 Hb_008834_010 Hb_008834_010 Hb_004312_020--Hb_008834_010 Hb_004312_020--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_004312_020--Hb_001468_040 Hb_035651_010 Hb_035651_010 Hb_004312_020--Hb_035651_010 Hb_004312_020--Hb_188075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130237 1.22743 0.696766 0.781913 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.891043 4.72096

CAGE analysis