Hb_001497_040

Information

Type -
Description -
Location Contig1497: 76894-92125
Sequence    

Annotation

kegg
ID pop:POPTR_0008s219701
description hypothetical protein
nr
ID XP_006380107.1
description hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G6G5
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s219701g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001497_040 0.0 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
2 Hb_032260_110 0.1073236585 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002400_080 0.1264389833 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_002615_080 0.1506389034 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
5 Hb_002798_080 0.1615434715 - - hypothetical protein VITISV_043745 [Vitis vinifera]
6 Hb_002276_030 0.1622281806 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
7 Hb_006827_030 0.1670257625 - - oligopeptide transporter, putative [Ricinus communis]
8 Hb_000853_050 0.1713855516 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003786_010 0.172821491 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_000062_050 0.174291661 - - protein binding protein, putative [Ricinus communis]
11 Hb_001579_060 0.1764325577 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_171168_010 0.1785720852 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_126933_010 0.1793808413 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
14 Hb_000049_170 0.1799120626 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003680_010 0.1825216092 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_004785_200 0.1830269129 - - PREDICTED: protein MKS1 [Jatropha curcas]
17 Hb_001244_050 0.1830508939 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
18 Hb_000215_230 0.1846217405 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
19 Hb_007035_010 0.1860678025 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
20 Hb_002155_020 0.1882137716 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]

Gene co-expression network

sample Hb_001497_040 Hb_001497_040 Hb_032260_110 Hb_032260_110 Hb_001497_040--Hb_032260_110 Hb_002400_080 Hb_002400_080 Hb_001497_040--Hb_002400_080 Hb_002615_080 Hb_002615_080 Hb_001497_040--Hb_002615_080 Hb_002798_080 Hb_002798_080 Hb_001497_040--Hb_002798_080 Hb_002276_030 Hb_002276_030 Hb_001497_040--Hb_002276_030 Hb_006827_030 Hb_006827_030 Hb_001497_040--Hb_006827_030 Hb_114271_010 Hb_114271_010 Hb_032260_110--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_032260_110--Hb_000215_230 Hb_003786_010 Hb_003786_010 Hb_032260_110--Hb_003786_010 Hb_032260_110--Hb_002798_080 Hb_004208_010 Hb_004208_010 Hb_032260_110--Hb_004208_010 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_000680_130 Hb_000680_130 Hb_002615_080--Hb_000680_130 Hb_003680_010 Hb_003680_010 Hb_002615_080--Hb_003680_010 Hb_002615_080--Hb_006827_030 Hb_001579_060 Hb_001579_060 Hb_002615_080--Hb_001579_060 Hb_002636_070 Hb_002636_070 Hb_002615_080--Hb_002636_070 Hb_001652_130 Hb_001652_130 Hb_002615_080--Hb_001652_130 Hb_006787_070 Hb_006787_070 Hb_002798_080--Hb_006787_070 Hb_001345_040 Hb_001345_040 Hb_002798_080--Hb_001345_040 Hb_006588_020 Hb_006588_020 Hb_002798_080--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_002798_080--Hb_188075_010 Hb_004312_020 Hb_004312_020 Hb_002798_080--Hb_004312_020 Hb_008878_020 Hb_008878_020 Hb_002276_030--Hb_008878_020 Hb_002276_030--Hb_001244_050 Hb_006277_080 Hb_006277_080 Hb_002276_030--Hb_006277_080 Hb_000608_360 Hb_000608_360 Hb_002276_030--Hb_000608_360 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_001172_150 Hb_001172_150 Hb_002276_030--Hb_001172_150 Hb_006827_030--Hb_001579_060 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027287 0.0685152 0.108627 0.0473543 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0597613 0.199015

CAGE analysis