Hb_002845_020

Information

Type -
Description -
Location Contig2845: 11506-14685
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14920g
description POPTRDRAFT_1095884; hypothetical protein
nr
ID XP_002318300.2
description hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9I4Q4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14920g PE=4 SV=2
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002845_020 0.0 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
2 Hb_003494_180 0.0764049718 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
3 Hb_001866_100 0.0782390155 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_007205_020 0.0843695628 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_000049_170 0.0886984943 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001301_010 0.0984159732 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_016637_020 0.1094517627 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
8 Hb_000500_360 0.113863121 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_007035_010 0.1191826828 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
10 Hb_064106_010 0.1247153408 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
11 Hb_006588_020 0.127425673 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_000776_020 0.127734378 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
13 Hb_000147_020 0.1286209786 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
14 Hb_031201_010 0.1289214177 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
15 Hb_006827_030 0.1293928058 - - oligopeptide transporter, putative [Ricinus communis]
16 Hb_031862_200 0.1336668992 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_000732_180 0.1338523227 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
18 Hb_000009_390 0.1394791519 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
19 Hb_007113_020 0.1421047135 - - -
20 Hb_000640_330 0.1454836982 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002845_020 Hb_002845_020 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_001866_100 Hb_001866_100 Hb_002845_020--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_002845_020--Hb_007205_020 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_003494_180--Hb_016637_020 Hb_003494_180--Hb_007205_020 Hb_003494_180--Hb_001866_100 Hb_057321_010 Hb_057321_010 Hb_003494_180--Hb_057321_010 Hb_001856_110 Hb_001856_110 Hb_003494_180--Hb_001856_110 Hb_007035_010 Hb_007035_010 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_007205_020--Hb_016637_020 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_006827_030 Hb_006827_030 Hb_000049_170--Hb_006827_030 Hb_000049_170--Hb_006588_020 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360 Hb_171168_010 Hb_171168_010 Hb_000049_170--Hb_171168_010 Hb_000776_020 Hb_000776_020 Hb_001301_010--Hb_000776_020 Hb_000416_010 Hb_000416_010 Hb_001301_010--Hb_000416_010 Hb_000442_170 Hb_000442_170 Hb_001301_010--Hb_000442_170 Hb_001301_010--Hb_001866_100 Hb_001301_010--Hb_007205_020 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123351 0.162426 0.0488249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.198757 0.356593

CAGE analysis