Hb_004208_010

Information

Type -
Description -
Location Contig4208: 647-9194
Sequence    

Annotation

kegg
ID bvg:104894372
description uncharacterized LOC104894372
nr
ID XP_012702297.1
description PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
swissprot
ID -
description -
trembl
ID B8B5X3
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25921 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_010 0.0 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
2 Hb_032260_110 0.1913661666 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001942_020 0.1979546602 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
4 Hb_106070_010 0.2075227517 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
5 Hb_001421_040 0.2093229237 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]
6 Hb_003786_010 0.211622012 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
7 Hb_114271_010 0.2156740968 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
8 Hb_148800_010 0.223092749 - - -
9 Hb_001497_040 0.2232747848 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
10 Hb_002798_080 0.2289981947 - - hypothetical protein VITISV_043745 [Vitis vinifera]
11 Hb_006940_020 0.2334836773 - - polyprotein [Oryza australiensis]
12 Hb_000215_230 0.234550668 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
13 Hb_002043_100 0.2345606221 - - conserved hypothetical protein [Ricinus communis]
14 Hb_182651_020 0.2368329613 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_013420_060 0.2378537651 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
16 Hb_003333_040 0.2405168852 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000853_050 0.2415417436 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001516_050 0.2451897991 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
19 Hb_037711_010 0.2473980726 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_006483_120 0.248794149 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004208_010 Hb_004208_010 Hb_032260_110 Hb_032260_110 Hb_004208_010--Hb_032260_110 Hb_001942_020 Hb_001942_020 Hb_004208_010--Hb_001942_020 Hb_106070_010 Hb_106070_010 Hb_004208_010--Hb_106070_010 Hb_001421_040 Hb_001421_040 Hb_004208_010--Hb_001421_040 Hb_003786_010 Hb_003786_010 Hb_004208_010--Hb_003786_010 Hb_114271_010 Hb_114271_010 Hb_004208_010--Hb_114271_010 Hb_001497_040 Hb_001497_040 Hb_032260_110--Hb_001497_040 Hb_032260_110--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_032260_110--Hb_000215_230 Hb_032260_110--Hb_003786_010 Hb_002798_080 Hb_002798_080 Hb_032260_110--Hb_002798_080 Hb_022213_030 Hb_022213_030 Hb_001942_020--Hb_022213_030 Hb_001516_050 Hb_001516_050 Hb_001942_020--Hb_001516_050 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_007527_040 Hb_007527_040 Hb_001942_020--Hb_007527_040 Hb_177343_010 Hb_177343_010 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030 Hb_003291_030 Hb_003291_030 Hb_106070_010--Hb_003291_030 Hb_106070_010--Hb_003786_010 Hb_008484_020 Hb_008484_020 Hb_106070_010--Hb_008484_020 Hb_000084_140 Hb_000084_140 Hb_106070_010--Hb_000084_140 Hb_006940_020 Hb_006940_020 Hb_106070_010--Hb_006940_020 Hb_001377_060 Hb_001377_060 Hb_001421_040--Hb_001377_060 Hb_001728_110 Hb_001728_110 Hb_001421_040--Hb_001728_110 Hb_002043_100 Hb_002043_100 Hb_001421_040--Hb_002043_100 Hb_001907_080 Hb_001907_080 Hb_001421_040--Hb_001907_080 Hb_000007_030 Hb_000007_030 Hb_001421_040--Hb_000007_030 Hb_002835_090 Hb_002835_090 Hb_001421_040--Hb_002835_090 Hb_011472_050 Hb_011472_050 Hb_003786_010--Hb_011472_050 Hb_005542_010 Hb_005542_010 Hb_003786_010--Hb_005542_010 Hb_010565_030 Hb_010565_030 Hb_003786_010--Hb_010565_030 Hb_006277_080 Hb_006277_080 Hb_003786_010--Hb_006277_080 Hb_025045_010 Hb_025045_010 Hb_003786_010--Hb_025045_010 Hb_000574_320 Hb_000574_320 Hb_003786_010--Hb_000574_320 Hb_032733_020 Hb_032733_020 Hb_114271_010--Hb_032733_020 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_013420_060 Hb_013420_060 Hb_114271_010--Hb_013420_060 Hb_002005_050 Hb_002005_050 Hb_114271_010--Hb_002005_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.03907 0.0357971 0.0446323 0.030151 0 0.0209216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0281931 0.144742

CAGE analysis