Hb_001516_050

Information

Type -
Description -
Location Contig1516: 71116-74628
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05230g
description POPTRDRAFT_560535; curculin-like lectin family protein
nr
ID XP_012086115.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID B9H9X2
description Serine/threonine-protein kinase OS=Populus trichocarpa GN=POPTR_0006s05230g PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd3-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12866: 72347-73142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001516_050 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
2 Hb_022213_030 0.1327489378 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
3 Hb_000599_230 0.1571281414 - - -
4 Hb_001266_120 0.1578015173 - - auxilin, putative [Ricinus communis]
5 Hb_002320_090 0.1582212757 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
6 Hb_001080_150 0.160731104 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
7 Hb_001942_020 0.1627353733 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
8 Hb_000270_710 0.1652630907 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
9 Hb_003632_030 0.1772210431 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
10 Hb_002636_040 0.1830401429 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
11 Hb_000668_110 0.1843147016 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
12 Hb_010984_010 0.1845899249 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_090530_010 0.1854328085 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_012165_020 0.1856389659 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
15 Hb_000696_190 0.1886460215 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
16 Hb_000731_290 0.1901005161 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003490_050 0.1928284925 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
18 Hb_000256_110 0.192839161 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
19 Hb_000370_040 0.1938568416 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_001341_010 0.1950200858 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001516_050 Hb_001516_050 Hb_022213_030 Hb_022213_030 Hb_001516_050--Hb_022213_030 Hb_000599_230 Hb_000599_230 Hb_001516_050--Hb_000599_230 Hb_001266_120 Hb_001266_120 Hb_001516_050--Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001516_050--Hb_002320_090 Hb_001080_150 Hb_001080_150 Hb_001516_050--Hb_001080_150 Hb_001942_020 Hb_001942_020 Hb_001516_050--Hb_001942_020 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_022213_030--Hb_001942_020 Hb_022213_030--Hb_001080_150 Hb_177343_010 Hb_177343_010 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_004735_020 Hb_004735_020 Hb_000599_230--Hb_004735_020 Hb_002681_080 Hb_002681_080 Hb_000599_230--Hb_002681_080 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_010757_030 Hb_010757_030 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_001266_120--Hb_002320_090 Hb_005288_110 Hb_005288_110 Hb_001266_120--Hb_005288_110 Hb_024570_040 Hb_024570_040 Hb_001266_120--Hb_024570_040 Hb_003632_030 Hb_003632_030 Hb_001266_120--Hb_003632_030 Hb_085187_010 Hb_085187_010 Hb_001266_120--Hb_085187_010 Hb_001266_120--Hb_177343_010 Hb_000964_170 Hb_000964_170 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_002320_090--Hb_000270_710 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050 Hb_001195_370 Hb_001195_370 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_000329_080 Hb_000329_080 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_007527_040 Hb_007527_040 Hb_001942_020--Hb_007527_040 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65525 1.48393 1.84509 2.93847 0.983219 1.86552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337164 0.167564 0.292795 3.90935 8.36939

CAGE analysis