Hb_001087_010

Information

Type -
Description -
Location Contig1087: 9009-12987
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21290g
description POPTRDRAFT_758315; hypothetical protein
nr
ID XP_012067121.1
description PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GY89
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02632: 11607-12440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001087_010 0.0 - - PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
2 Hb_000906_070 0.1358014319 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
3 Hb_000992_020 0.1427224358 - - monoxygenase, putative [Ricinus communis]
4 Hb_010984_010 0.1441832332 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000803_220 0.1504020711 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
6 Hb_007894_190 0.1548966059 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
7 Hb_000359_220 0.1552062463 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
8 Hb_000964_170 0.155901889 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
9 Hb_024677_010 0.1582743127 - - superoxide dismutase [fe], putative [Ricinus communis]
10 Hb_002320_090 0.1590961974 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
11 Hb_006916_030 0.1603773932 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_000270_710 0.1647591416 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
13 Hb_001109_160 0.1652562172 - - DNA binding protein, putative [Ricinus communis]
14 Hb_002110_090 0.1669215634 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
15 Hb_007576_180 0.1674807201 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
16 Hb_164926_010 0.167991545 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
17 Hb_002783_070 0.1721910475 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
18 Hb_001053_020 0.1741436813 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
19 Hb_001348_090 0.1766642583 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
20 Hb_002636_040 0.1788670485 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001087_010 Hb_001087_010 Hb_000906_070 Hb_000906_070 Hb_001087_010--Hb_000906_070 Hb_000992_020 Hb_000992_020 Hb_001087_010--Hb_000992_020 Hb_010984_010 Hb_010984_010 Hb_001087_010--Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_001087_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_001087_010--Hb_007894_190 Hb_000359_220 Hb_000359_220 Hb_001087_010--Hb_000359_220 Hb_004346_040 Hb_004346_040 Hb_000906_070--Hb_004346_040 Hb_001109_160 Hb_001109_160 Hb_000906_070--Hb_001109_160 Hb_006916_030 Hb_006916_030 Hb_000906_070--Hb_006916_030 Hb_000906_070--Hb_000359_220 Hb_029552_020 Hb_029552_020 Hb_000906_070--Hb_029552_020 Hb_013399_090 Hb_013399_090 Hb_000906_070--Hb_013399_090 Hb_000992_020--Hb_000906_070 Hb_001213_040 Hb_001213_040 Hb_000992_020--Hb_001213_040 Hb_000251_050 Hb_000251_050 Hb_000992_020--Hb_000251_050 Hb_000069_500 Hb_000069_500 Hb_000992_020--Hb_000069_500 Hb_003020_300 Hb_003020_300 Hb_000992_020--Hb_003020_300 Hb_010984_010--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_000803_240 Hb_000803_240 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_018043_020 Hb_018043_020 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_000803_220--Hb_007576_180 Hb_164926_010 Hb_164926_010 Hb_000803_220--Hb_164926_010 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_000803_220--Hb_018043_020 Hb_007894_190--Hb_164926_010 Hb_000224_220 Hb_000224_220 Hb_007894_190--Hb_000224_220 Hb_007894_190--Hb_000803_220 Hb_001689_050 Hb_001689_050 Hb_007894_190--Hb_001689_050 Hb_000009_020 Hb_000009_020 Hb_007894_190--Hb_000009_020 Hb_150651_020 Hb_150651_020 Hb_007894_190--Hb_150651_020 Hb_000320_360 Hb_000320_360 Hb_000359_220--Hb_000320_360 Hb_001411_050 Hb_001411_050 Hb_000359_220--Hb_001411_050 Hb_000359_220--Hb_013399_090 Hb_006846_080 Hb_006846_080 Hb_000359_220--Hb_006846_080 Hb_001411_030 Hb_001411_030 Hb_000359_220--Hb_001411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.538449 2.03434 3.66567 2.95386 1.41142 2.4456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.189116 0.024797 0.186296 2.68265 8.71233

CAGE analysis