Hb_000370_040

Information

Type -
Description -
Location Contig370: 62325-65730
Sequence    

Annotation

kegg
ID rcu:RCOM_0813100
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_012078965.1
description PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9RYG6
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_0813100 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38030: 63318-144063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000370_040 0.0 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
2 Hb_022213_030 0.1293961021 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
3 Hb_000270_830 0.192076736 - - aldehyde dehydrogenase, putative [Ricinus communis]
4 Hb_000836_060 0.1931404479 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
5 Hb_001516_050 0.1938568416 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
6 Hb_010417_130 0.198724415 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
7 Hb_009674_050 0.2028775939 - - Endosomal P24A protein precursor, putative [Ricinus communis]
8 Hb_000244_260 0.2040237646 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
9 Hb_001105_130 0.2071230341 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_116702_010 0.2087426311 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
11 Hb_030959_010 0.2088453861 - - cullin, putative [Ricinus communis]
12 Hb_005116_140 0.2089742755 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
13 Hb_001430_100 0.209767795 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001951_070 0.2107813406 - - putative protein [Arabidopsis thaliana]
15 Hb_027380_150 0.2120689189 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003894_010 0.2121774051 - - unnamed protein product [Vitis vinifera]
17 Hb_000997_290 0.2124036789 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
18 Hb_111868_010 0.2137191542 - - hypothetical protein CICLE_v10029531mg [Citrus clementina]
19 Hb_001801_020 0.2146492656 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
20 Hb_000270_660 0.2157685639 - - purine permease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000370_040 Hb_000370_040 Hb_022213_030 Hb_022213_030 Hb_000370_040--Hb_022213_030 Hb_000270_830 Hb_000270_830 Hb_000370_040--Hb_000270_830 Hb_000836_060 Hb_000836_060 Hb_000370_040--Hb_000836_060 Hb_001516_050 Hb_001516_050 Hb_000370_040--Hb_001516_050 Hb_010417_130 Hb_010417_130 Hb_000370_040--Hb_010417_130 Hb_009674_050 Hb_009674_050 Hb_000370_040--Hb_009674_050 Hb_022213_030--Hb_001516_050 Hb_001942_020 Hb_001942_020 Hb_022213_030--Hb_001942_020 Hb_001080_150 Hb_001080_150 Hb_022213_030--Hb_001080_150 Hb_177343_010 Hb_177343_010 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_000270_830--Hb_000270_710 Hb_025045_010 Hb_025045_010 Hb_000270_830--Hb_025045_010 Hb_000997_290 Hb_000997_290 Hb_000270_830--Hb_000997_290 Hb_027380_150 Hb_027380_150 Hb_000270_830--Hb_027380_150 Hb_001969_130 Hb_001969_130 Hb_000270_830--Hb_001969_130 Hb_000487_370 Hb_000487_370 Hb_000270_830--Hb_000487_370 Hb_030959_010 Hb_030959_010 Hb_000836_060--Hb_030959_010 Hb_000106_030 Hb_000106_030 Hb_000836_060--Hb_000106_030 Hb_002611_010 Hb_002611_010 Hb_000836_060--Hb_002611_010 Hb_000836_060--Hb_009674_050 Hb_001473_170 Hb_001473_170 Hb_000836_060--Hb_001473_170 Hb_005348_110 Hb_005348_110 Hb_000836_060--Hb_005348_110 Hb_000599_230 Hb_000599_230 Hb_001516_050--Hb_000599_230 Hb_001266_120 Hb_001266_120 Hb_001516_050--Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001516_050--Hb_002320_090 Hb_001516_050--Hb_001080_150 Hb_001516_050--Hb_001942_020 Hb_011994_070 Hb_011994_070 Hb_010417_130--Hb_011994_070 Hb_001140_170 Hb_001140_170 Hb_010417_130--Hb_001140_170 Hb_010417_130--Hb_000270_830 Hb_000042_060 Hb_000042_060 Hb_010417_130--Hb_000042_060 Hb_105033_010 Hb_105033_010 Hb_010417_130--Hb_105033_010 Hb_010417_130--Hb_000270_710 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01757 1.57824 1.15013 4.44699 0.443182 0.373626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383117 0.339162 0.71974 2.63707 6.01989

CAGE analysis