Hb_010417_130

Information

Type -
Description -
Location Contig10417: 93015-94453
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13330g
description POPTRDRAFT_646680; hypothetical protein
nr
ID XP_012086806.1
description PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
swissprot
ID Q9SH58
description Probable membrane-associated kinase regulator 2 OS=Arabidopsis thaliana GN=MAKR2 PE=2 SV=1
trembl
ID A0A067JRC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20524 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_130 0.0 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
2 Hb_011994_070 0.1534963248 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
3 Hb_001140_170 0.1657623421 - - PREDICTED: remorin [Jatropha curcas]
4 Hb_000270_830 0.1700923771 - - aldehyde dehydrogenase, putative [Ricinus communis]
5 Hb_000042_060 0.1825537668 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
6 Hb_105033_010 0.1869457534 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
7 Hb_000270_710 0.1871840757 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
8 Hb_003894_010 0.1912479415 - - unnamed protein product [Vitis vinifera]
9 Hb_172632_130 0.1920782232 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
10 Hb_001675_050 0.1924789385 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
11 Hb_004735_020 0.1935662325 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
12 Hb_000629_070 0.1976664831 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
13 Hb_116702_010 0.1981843174 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
14 Hb_000370_040 0.198724415 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_005375_110 0.1996879782 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
16 Hb_000521_090 0.1999264576 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
17 Hb_005116_140 0.2034857846 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_002559_030 0.2044351942 - - oxidoreductase, putative [Ricinus communis]
19 Hb_003207_030 0.2047755869 - - hypothetical protein VITISV_027754 [Vitis vinifera]
20 Hb_001269_050 0.2059070109 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_010417_130 Hb_010417_130 Hb_011994_070 Hb_011994_070 Hb_010417_130--Hb_011994_070 Hb_001140_170 Hb_001140_170 Hb_010417_130--Hb_001140_170 Hb_000270_830 Hb_000270_830 Hb_010417_130--Hb_000270_830 Hb_000042_060 Hb_000042_060 Hb_010417_130--Hb_000042_060 Hb_105033_010 Hb_105033_010 Hb_010417_130--Hb_105033_010 Hb_000270_710 Hb_000270_710 Hb_010417_130--Hb_000270_710 Hb_011994_070--Hb_000270_830 Hb_000084_140 Hb_000084_140 Hb_011994_070--Hb_000084_140 Hb_001195_250 Hb_001195_250 Hb_011994_070--Hb_001195_250 Hb_106070_010 Hb_106070_010 Hb_011994_070--Hb_106070_010 Hb_011994_070--Hb_000042_060 Hb_027445_030 Hb_027445_030 Hb_001140_170--Hb_027445_030 Hb_011828_010 Hb_011828_010 Hb_001140_170--Hb_011828_010 Hb_020586_010 Hb_020586_010 Hb_001140_170--Hb_020586_010 Hb_004097_090 Hb_004097_090 Hb_001140_170--Hb_004097_090 Hb_014361_090 Hb_014361_090 Hb_001140_170--Hb_014361_090 Hb_003894_010 Hb_003894_010 Hb_001140_170--Hb_003894_010 Hb_000270_830--Hb_000270_710 Hb_025045_010 Hb_025045_010 Hb_000270_830--Hb_025045_010 Hb_000997_290 Hb_000997_290 Hb_000270_830--Hb_000997_290 Hb_027380_150 Hb_027380_150 Hb_000270_830--Hb_027380_150 Hb_001969_130 Hb_001969_130 Hb_000270_830--Hb_001969_130 Hb_000487_370 Hb_000487_370 Hb_000270_830--Hb_000487_370 Hb_006422_020 Hb_006422_020 Hb_000042_060--Hb_006422_020 Hb_167775_010 Hb_167775_010 Hb_000042_060--Hb_167775_010 Hb_002374_550 Hb_002374_550 Hb_000042_060--Hb_002374_550 Hb_001269_520 Hb_001269_520 Hb_000042_060--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_000042_060--Hb_000251_050 Hb_000071_160 Hb_000071_160 Hb_000042_060--Hb_000071_160 Hb_005532_020 Hb_005532_020 Hb_105033_010--Hb_005532_020 Hb_002675_080 Hb_002675_080 Hb_105033_010--Hb_002675_080 Hb_000271_220 Hb_000271_220 Hb_105033_010--Hb_000271_220 Hb_000422_080 Hb_000422_080 Hb_105033_010--Hb_000422_080 Hb_000042_050 Hb_000042_050 Hb_105033_010--Hb_000042_050 Hb_105033_010--Hb_014361_090 Hb_002320_090 Hb_002320_090 Hb_000270_710--Hb_002320_090 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_006916_030 Hb_006916_030 Hb_000270_710--Hb_006916_030 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_000964_170 Hb_000964_170 Hb_000270_710--Hb_000964_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03672 0.999192 0.616871 2.03459 0.340744 0.397924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.456421 0.110479 0 0.585178 2.8186

CAGE analysis