Hb_011994_070

Information

Type -
Description -
Location Contig11994: 106466-112270
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23620g
description POPTRDRAFT_1092563; GTP-binding family protein
nr
ID XP_012080999.1
description PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
swissprot
ID O49841
description Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1
trembl
ID A0A067K2Q1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16180 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05965: 110266-110534 , PASA_asmbl_05966: 111765-111885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011994_070 0.0 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
2 Hb_010417_130 0.1534963248 - - PREDICTED: probable membrane-associated kinase regulator 2 [Jatropha curcas]
3 Hb_000270_830 0.1799182879 - - aldehyde dehydrogenase, putative [Ricinus communis]
4 Hb_000084_140 0.1878329985 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
5 Hb_001195_250 0.2052636663 - - lrr receptor protein kinase, putative [Ricinus communis]
6 Hb_106070_010 0.2119744901 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
7 Hb_000042_060 0.2162883156 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
8 Hb_001269_520 0.2189082207 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
9 Hb_003786_010 0.2205394576 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_000840_260 0.2238510996 transcription factor TF Family: GRAS hypothetical protein POPTR_0019s02540g [Populus trichocarpa]
11 Hb_002010_110 0.2251212848 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
12 Hb_000215_230 0.2272990268 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
13 Hb_000152_530 0.2277232073 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
14 Hb_020400_020 0.2283618104 - - starch synthase isoform II [Manihot esculenta]
15 Hb_007933_030 0.229258401 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
16 Hb_000056_110 0.2293943581 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
17 Hb_001579_150 0.2316137332 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002559_030 0.231809158 - - oxidoreductase, putative [Ricinus communis]
19 Hb_005779_090 0.2321347153 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
20 Hb_000392_210 0.2357687199 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]

Gene co-expression network

sample Hb_011994_070 Hb_011994_070 Hb_010417_130 Hb_010417_130 Hb_011994_070--Hb_010417_130 Hb_000270_830 Hb_000270_830 Hb_011994_070--Hb_000270_830 Hb_000084_140 Hb_000084_140 Hb_011994_070--Hb_000084_140 Hb_001195_250 Hb_001195_250 Hb_011994_070--Hb_001195_250 Hb_106070_010 Hb_106070_010 Hb_011994_070--Hb_106070_010 Hb_000042_060 Hb_000042_060 Hb_011994_070--Hb_000042_060 Hb_001140_170 Hb_001140_170 Hb_010417_130--Hb_001140_170 Hb_010417_130--Hb_000270_830 Hb_010417_130--Hb_000042_060 Hb_105033_010 Hb_105033_010 Hb_010417_130--Hb_105033_010 Hb_000270_710 Hb_000270_710 Hb_010417_130--Hb_000270_710 Hb_000270_830--Hb_000270_710 Hb_025045_010 Hb_025045_010 Hb_000270_830--Hb_025045_010 Hb_000997_290 Hb_000997_290 Hb_000270_830--Hb_000997_290 Hb_027380_150 Hb_027380_150 Hb_000270_830--Hb_027380_150 Hb_001969_130 Hb_001969_130 Hb_000270_830--Hb_001969_130 Hb_000487_370 Hb_000487_370 Hb_000270_830--Hb_000487_370 Hb_020400_020 Hb_020400_020 Hb_000084_140--Hb_020400_020 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_004109_130 Hb_004109_130 Hb_000084_140--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_000084_140--Hb_065525_070 Hb_000538_300 Hb_000538_300 Hb_000084_140--Hb_000538_300 Hb_000976_130 Hb_000976_130 Hb_000084_140--Hb_000976_130 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_003177_090 Hb_003177_090 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_003291_030 Hb_003291_030 Hb_106070_010--Hb_003291_030 Hb_003786_010 Hb_003786_010 Hb_106070_010--Hb_003786_010 Hb_008484_020 Hb_008484_020 Hb_106070_010--Hb_008484_020 Hb_106070_010--Hb_000084_140 Hb_006940_020 Hb_006940_020 Hb_106070_010--Hb_006940_020 Hb_004208_010 Hb_004208_010 Hb_106070_010--Hb_004208_010 Hb_006422_020 Hb_006422_020 Hb_000042_060--Hb_006422_020 Hb_167775_010 Hb_167775_010 Hb_000042_060--Hb_167775_010 Hb_002374_550 Hb_002374_550 Hb_000042_060--Hb_002374_550 Hb_000042_060--Hb_001269_520 Hb_000042_060--Hb_000251_050 Hb_000071_160 Hb_000071_160 Hb_000042_060--Hb_000071_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.61326 0.843357 0.428929 1.27474 0.0741547 0.0702198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274348 0 0 0.293673 2.38916

CAGE analysis